CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92668
EES07862
EES09846
KXG22792

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	EER92668	AT1G27700.1	21798944
AT1G51740.1	EES07862	AT3G08780.1	21798944
AT1G51740.1	KXG22792	AT3G08780.1	21798944
AT1G51740.1	EES09846	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11165	Sorghum	cytosol	82.29	90.85
Zm00001d026122_P004	Maize	plasma membrane	81.43	89.91
HORVU2Hr1G091230.1	Barley	cytosol	76.57	84.54
TraesCS2A01G372700.1	Wheat	cytosol	76.57	84.54
Os04t0530400-01	Rice	cytosol	76.0	84.18
Os12t0154400-00	Rice	cytosol	76.0	84.18
TraesCS2B01G389700.1	Wheat	cytosol	76.0	83.91
TraesCS2D01G368900.1	Wheat	cytosol	76.0	83.91
KRH48473	Soybean	cytosol	51.14	68.58
PGSC0003DMT400058087	Potato	cytosol	24.29	68.55
KRH04970	Soybean	cytosol	22.57	65.83
KRH39205	Soybean	cytosol	57.71	65.37
PGSC0003DMT400016313	Potato	cytosol	58.0	64.04
Solyc03g033850.2.1	Tomato	mitochondrion	51.14	63.93
Solyc04g071730.2.1	Tomato	nucleus	57.71	63.72
VIT_13s0019g03240.t01	Wine grape	cytosol	56.57	63.06
AT1G51740.1	Thale cress	cytosol	55.71	62.9
GSMUA_Achr11P...	Banana	cytosol	54.86	61.15

Protein Annotations

EnsemblPlants:OQU82137	EnsemblPlantsGene:SORBI_3006G180000	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	InterPro:SNARE	InterPro:Syntaxin-18_N	ncoils:Coil	PANTHER:PTHR15959
PFAM:PF10496	ProteinID:OQU82137	ProteinID:OQU82137.1	SEG:seg	SUPFAM:SSF47661	SUPFAM:SSF58038
UniParc:UPI000B8BAD8E	UniProt:A0A1Z5REL3	MapMan:22.7.1.5	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:53435659..53439837

Molecular Weight (calculated)

40147.1 Da

IEP (calculated)

8.795

GRAVY (calculated)

-0.514

Length

350 amino acids

Sequence
(BLAST)

001: MARVRDRTED FKEAVRVAAL SHGYTEAQLA ALMSSFIIRK PSPKSAFTNA AIKTLESIRE LESFIVKHRR DYVDLHRTTE QERDSIEHEV GVFVKACKEQ
101: IDILKNRIHE EEKNGSGKTW LGTRDESSRL DLIAHQHGVV LILSERLHSV TAQFDRLRSM RFQDAINRRM PRKKIQKRPE IKPAESSKSN LVLQSDVSKI
201: VEQEVSTAPM RVQEQLLDDE TKALQVELTS LLDAVQETET KMIEMSALNH LMSTHVLQQA QQIQYLYDQA VEATNNVERG NKELSQAIQR NNSSTSLLPK
301: HTVQCAVHLN MLGFVISFLA CKLEKRWALY HDAQVRRTSI SEQNQKLQLL

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.