Factsheet for GSMUA_Achr11P14090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr4P10890_001
GSMUA_Achr6P16380_001
GSMUA_Achr6P30760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	GSMUA_Achr10P...	AT1G27700.1	21798944
AT1G51740.1	GSMUA_Achr4P10890_001	AT1G27700.1	21798944
AT1G51740.1	GSMUA_Achr6P30760_001	AT1G27700.1	21798944
AT1G51740.1	GSMUA_Achr10P...	AT5G51010.1	21798944
AT1G51740.1	GSMUA_Achr6P16380_001	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058087	Potato	cytosol	29.62	75.0
KRH04970	Soybean	cytosol	28.03	73.33
KRH48473	Soybean	cytosol	60.51	72.8
KRH39205	Soybean	cytosol	67.2	68.28
Solyc04g071730.2.1	Tomato	nucleus	67.2	66.56
PGSC0003DMT400016313	Potato	cytosol	66.56	65.93
VIT_13s0019g03240.t01	Wine grape	cytosol	65.29	65.29
Os04t0530400-01	Rice	cytosol	65.29	64.87
Os12t0154400-00	Rice	cytosol	65.29	64.87
Zm00001d026122_P004	Maize	plasma membrane	65.29	64.67
Zm00001d025915_P002	Maize	cytosol	64.65	64.24
TraesCS2B01G389700.1	Wheat	cytosol	64.33	63.72
TraesCS2D01G368900.1	Wheat	cytosol	64.33	63.72
TraesCS2A01G372700.1	Wheat	cytosol	64.01	63.41
EES11165	Sorghum	cytosol	64.01	63.41
AT1G51740.1	Thale cress	cytosol	62.42	63.23
Solyc03g033850.2.1	Tomato	mitochondrion	56.37	63.21
HORVU2Hr1G091230.1	Barley	cytosol	63.69	63.09
OQU82137	Sorghum	cytosol	61.15	54.86

Protein Annotations

EnsemblPlants:GSMUA_Achr11P14090_001	EnsemblPlants:GSMUA_Achr11T14090_001	EnsemblPlantsGene:GSMUA_Achr11G14090_001	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:SNARE	InterPro:Syntaxin-18_N
ncoils:Coil	PANTHER:PTHR15959	PFAM:PF10496	SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI000295A678	UniProt:M0RS39	MapMan:22.7.1.5	:	:	:

Description

Syntaxin-81 [Source:GMGC_GENE;Acc:GSMUA_Achr11G14090_001]

Coordinates

chr11:-:15149615..15153557

Molecular Weight (calculated)

35867.7 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.385

Length

314 amino acids

Sequence
(BLAST)

001: MAKSRDRTDD FKDAIRATAP SLGYNESKLA AVLASFILHK PVEKSPFTKA ALKTLESISE LECFIIKHRK DYVDMHRITE QERDNIEHEV VIFVKSCRDQ
101: INILQNMICT EEKSTNTKSW LHRRDDNINA DVVAHKHGVV LILSERLHSV SVQFDRLRSI RSQEALNRAM PRRKINRVIH STSSEQLSEP SASSLPELGG
201: QEPTSRALRV QDQLMDDETR ALQVELSSLL DAVQEAETKT VEISVLSHLM STHVLQQAEQ IEHLYEQAVE ATNNVEQGNK ELSQAIKRNS SSRTFLLLFL
301: FVLTFSILFL DWYS

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.