Factsheet for PGSC0003DMT400058087

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400030171
PGSC0003DMT400036930
PGSC0003DMT400044093
PGSC0003DMT400055415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	PGSC0003DMT400030171	AT1G27700.1	21798944
AT1G51740.1	PGSC0003DMT400055415	AT1G27700.1	21798944
AT1G51740.1	PGSC0003DMT400044093	AT3G08780.1	21798944
AT1G51740.1	PGSC0003DMT400036930	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04970	Soybean	cytosol	78.23	80.83
Solyc03g033850.2.1	Tomato	mitochondrion	96.77	42.86
KRH48473	Soybean	cytosol	84.68	40.23
PGSC0003DMT400016313	Potato	cytosol	91.94	35.96
KRH39205	Soybean	cytosol	83.87	33.66
Os04t0530400-01	Rice	cytosol	79.84	31.33
Os12t0154400-00	Rice	cytosol	79.84	31.33
AT1G51740.1	Thale cress	cytosol	78.23	31.29
Zm00001d025915_P002	Maize	cytosol	78.23	30.7
Zm00001d026122_P004	Maize	plasma membrane	78.23	30.6
TraesCS2D01G368900.1	Wheat	cytosol	78.23	30.6
TraesCS2B01G389700.1	Wheat	cytosol	78.23	30.6
HORVU2Hr1G091230.1	Barley	cytosol	78.23	30.6
TraesCS2A01G372700.1	Wheat	cytosol	77.42	30.28
VIT_13s0019g03240.t01	Wine grape	cytosol	76.61	30.25
EES11165	Sorghum	cytosol	76.61	29.97
GSMUA_Achr11P...	Banana	cytosol	75.0	29.62
OQU82137	Sorghum	cytosol	68.55	24.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400058087	EnsemblPlantsGene:PGSC0003DMG400022548	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR15959	PGSC:PGSC0003DMG400022548	SEG:seg	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000294C29B
UniProt:M1C230	MapMan:22.7.1.5	:	:	:	:

Description

Syntaxin 81 [Source:PGSC_GENE;Acc:PGSC0003DMG400022548]

Coordinates

chr3:+:4149273..4152045

Molecular Weight (calculated)

14248.9 Da

IEP (calculated)

4.185

GRAVY (calculated)

-0.194

Length

124 amino acids

Sequence
(BLAST)

001: MKRDSEVRDS DVSQAAPLRV QEQLLDDETR ALQVELNSLL DSVQETETKM VEMSALNHLM STHVLQQAQQ IELLYEQAVE ATQNVELGNK ELSQAIQRNS
101: SSRTFLLLFL FVLTFSILFL DWYS

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.