Factsheet for Zm00001d025915_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007394_P001
Zm00001d025308_P001
Zm00001d028054_P002
Zm00001d044621_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	Zm00001d028054_P002	AT1G27700.1	21798944
AT1G51740.1	Zm00001d025308_P001	AT3G08780.1	21798944
AT1G51740.1	Zm00001d044621_P001	AT3G08780.1	21798944
AT1G51740.1	Zm00001d007394_P001	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11165	Sorghum	cytosol	96.2	95.9
Zm00001d026122_P004	Maize	plasma membrane	94.3	94.01
Os04t0530400-01	Rice	cytosol	88.92	88.92
Os12t0154400-00	Rice	cytosol	88.92	88.92
HORVU2Hr1G091230.1	Barley	cytosol	88.92	88.64
TraesCS2A01G372700.1	Wheat	cytosol	88.61	88.33
TraesCS2B01G389700.1	Wheat	cytosol	88.61	88.33
TraesCS2D01G368900.1	Wheat	cytosol	88.61	88.33
PGSC0003DMT400058087	Potato	cytosol	30.7	78.23
KRH04970	Soybean	cytosol	28.16	74.17
KRH48473	Soybean	cytosol	59.49	72.03
KRH39205	Soybean	cytosol	67.09	68.61
PGSC0003DMT400016313	Potato	cytosol	67.72	67.51
AT1G51740.1	Thale cress	cytosol	66.14	67.42
Solyc04g071730.2.1	Tomato	nucleus	67.41	67.19
Solyc03g033850.2.1	Tomato	mitochondrion	59.49	67.14
GSMUA_Achr11P...	Banana	cytosol	64.24	64.65
VIT_13s0019g03240.t01	Wine grape	cytosol	63.29	63.69

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100280225	MapMan:22.7.1.5	ProteinID:AQK45011.1	UniProt:B4FLS4	EMBL:BT038062
ncoils:Coil	EMBL:EU960979	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	PFAM:PF10496	PANTHER:PTHR15959	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-18_N	TMHMM:TMhelix	UniParc:UPI00017B6B51	EnsemblPlantsGene:Zm00001d025915	EnsemblPlants:Zm00001d025915_P002
EnsemblPlants:Zm00001d025915_T002	SEG:seg	:	:	:	:

Description

Syntaxin-81

Coordinates

chr10:+:133733079..133739911

Molecular Weight (calculated)

36384.5 Da

IEP (calculated)

8.458

GRAVY (calculated)

-0.506

Length

316 amino acids

Sequence
(BLAST)

001: MSRVRDRTED FKEAVRVAAL SHGYTEAQLA ALMSSFIIRK PSPKSPFTNA AIKTLESIRE LERFIVKHRR DYVDLHRITE QERDNIEHEI GVFVKACKEQ
101: IDILKNRIQE EEKNGSGKTW LGTRDGSSRL DLIAHQHGVV LILSERLHSV TAQFDRLRSM RFQDAINRAM PRKNQKRPEK KPAEPSKSSL VLKSDVSKIV
201: DQEASTAPMR VQEQLLDDET KALQVELTSL LDAVQETETK MIEMSALNHL MSTHVLQQAQ QIQYLYDQAV EATNNVERGN KELSQAIQRN SSSRTFLLLF
301: FFVLTFSVLF LDWYNN

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.