Factsheet for Solyc04g071730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118130.2.1
Solyc04g078130.2.1
Solyc09g015180.2.1
Solyc12g088440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	Solyc04g078130.2.1	AT1G27700.1	21798944
AT1G51740.1	Solyc12g088440.1.1	AT1G27700.1	21798944
AT1G51740.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT1G51740.1	Solyc03g118130.2.1	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016313	Potato	cytosol	97.79	97.79
Solyc03g033850.2.1	Tomato	mitochondrion	81.7	92.5
KRH04970	Soybean	cytosol	29.97	79.17
KRH48473	Soybean	cytosol	63.09	76.63
KRH39205	Soybean	cytosol	71.92	73.79
VIT_13s0019g03240.t01	Wine grape	cytosol	71.29	71.97
AT1G51740.1	Thale cress	cytosol	70.03	71.61
Zm00001d025915_P002	Maize	cytosol	67.19	67.41
GSMUA_Achr11P...	Banana	cytosol	66.56	67.2
TraesCS2D01G368900.1	Wheat	cytosol	67.19	67.19
TraesCS2B01G389700.1	Wheat	cytosol	67.19	67.19
EES11165	Sorghum	cytosol	66.88	66.88
Zm00001d026122_P004	Maize	plasma membrane	66.88	66.88
TraesCS2A01G372700.1	Wheat	cytosol	66.88	66.88
Os04t0530400-01	Rice	cytosol	66.56	66.77
Os12t0154400-00	Rice	cytosol	66.25	66.46
HORVU2Hr1G091230.1	Barley	cytosol	66.25	66.25
OQU82137	Sorghum	cytosol	63.72	57.71

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.5	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006888	GO:GO:0006890	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0031201	UniProt:K4BTG3	PFAM:PF10496
PANTHER:PTHR15959	InterPro:SNARE	SUPFAM:SSF47661	EnsemblPlantsGene:Solyc04g071730.2	EnsemblPlants:Solyc04g071730.2.1	InterPro:Syntaxin-18_N
TMHMM:TMhelix	UniParc:UPI0002766A1C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:58696087..58701355

Molecular Weight (calculated)

36018.7 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.507

Length

317 amino acids

Sequence
(BLAST)

001: MSKVRDRTED FKDVAHRSAL SLGYDESKTA ALLASFIMHK PRQKSGFTRA ALKTLESIGT LEQFLMKHKK DYVDLHRTTE QERDSIEHEV TIFVKSCKEQ
101: IDVLRNSINE EDANSKGWLG LKGDNLNADT IAHKHGVVLI LSEKLHSVSS QFDQLRAIRF QDAINRVTPR RKRKNTTKSN AAETSVSSNL DPNMKRDSEG
201: LGDPDTQAAP IRVQEQLLDD ETRALQVELN SLLDSVQETE TKMVEMSALN HLMSTHVLQQ AQQIELLYEQ AVEATQNVEL GNKELSQAIQ RNSSSRTFLL
301: LFLFVLTFSI LFLDWYS

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.