Factsheet for HORVU2Hr1G091230.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi
MultiLoc:	cytosol
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G082810.2
HORVU4Hr1G043650.2
HORVU4Hr1G069400.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51740.1	HORVU4Hr1G069400.3	AT1G27700.1	21798944
AT1G51740.1	HORVU2Hr1G082810.2	AT3G08780.1	21798944
AT1G51740.1	HORVU4Hr1G043650.2	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G368900.1	Wheat	cytosol	97.48	97.48
TraesCS2B01G389700.1	Wheat	cytosol	97.48	97.48
TraesCS2A01G372700.1	Wheat	cytosol	97.48	97.48
EES11165	Sorghum	cytosol	89.91	89.91
Zm00001d026122_P004	Maize	plasma membrane	89.27	89.27
Os12t0154400-00	Rice	cytosol	88.64	88.92
Zm00001d025915_P002	Maize	cytosol	88.64	88.92
Os04t0530400-01	Rice	cytosol	88.01	88.29
PGSC0003DMT400058087	Potato	cytosol	30.6	78.23
OQU82137	Sorghum	cytosol	84.54	76.57
KRH04970	Soybean	cytosol	28.71	75.83
KRH48473	Soybean	cytosol	59.31	72.03
KRH39205	Soybean	cytosol	66.25	67.96
AT1G51740.1	Thale cress	cytosol	66.25	67.74
PGSC0003DMT400016313	Potato	cytosol	66.56	66.56
Solyc04g071730.2.1	Tomato	nucleus	66.25	66.25
VIT_13s0019g03240.t01	Wine grape	cytosol	64.04	64.65
Solyc03g033850.2.1	Tomato	mitochondrion	57.1	64.64
GSMUA_Achr11P...	Banana	cytosol	63.09	63.69

Protein Annotations

EnsemblPlants:HORVU2Hr1G091230.1	EnsemblPlantsGene:HORVU2Hr1G091230	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Syntaxin-18_N	ncoils:Coil	PANTHER:PTHR15959	PFAM:PF10496	SEG:seg	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000B46C4AD	UniProt:A0A287IX57	MapMan:22.7.1.5	:	:

Description

No Description!

Coordinates

chrchr2H:-:647313038..647322216

Molecular Weight (calculated)

36993.3 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.559

Length

317 amino acids

Sequence
(BLAST)

001: MSRVRDRTED FKESVRVAAL SHGYTESQLA ALMSSFIIRK PSPKSPFINA AVKTLESIRE LEKFIVKHRR DYVDMHRTTE QERDTIEHEV GVFVKACKEQ
101: IDILKNRIHE DERNRRANTW LGTRDETSRL DLIAHQHGVV LILSERLHSV TAQFDRLRSL RFQEAINRAM PRKKIKKRPE IKPTEPSKSN LVLKSDVSKV
201: EDREVSTAPL RVQEQLLDDE TRALQMELTN LLDTVQETET KMIEMSALNH LMSTHVLQQA QQIQYLYDQA VEATNNVERG NKELSQAIQR NSSSRTFLLL
301: FFFVLTFSVL FLDWYKN

Best Arabidopsis Sequence Match ( AT1G51740.1 )
(BLAST)

001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS

Arabidopsis Description

SYP81Syntaxin-81 [Source:UniProtKB/Swiss-Prot;Acc:P59277]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.