Factsheet for HORVU6Hr1G029540.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G138100.1	Wheat	cytosol, nucleus, peroxisome, plastid	88.21	90.42
TraesCS6A01G148700.1	Wheat	cytosol	87.14	88.63
TraesCS6B01G176900.1	Wheat	cytosol, nucleus, peroxisome, plastid	86.83	87.5
KXG29624	Sorghum	cytosol	76.57	75.53
Os02t0179600-01	Rice	extracellular	74.58	74.24
Zm00001d053740_P001	Maize	cytosol	72.59	72.37
HORVU7Hr1G112970.1	Barley	cytosol, nucleus	64.78	65.68
PGSC0003DMT400094367	Potato	cytosol	10.26	63.21
CDX86854	Canola	cytosol	26.65	60.0
CDX69659	Canola	cytosol	24.66	58.33
CDX99560	Canola	cytosol	12.1	58.09
CDY60899	Canola	cytosol	27.11	58.03
Solyc01g009540.1.1	Tomato	cytosol	8.12	55.79
VIT_05s0049g00640.t01	Wine grape	cytosol	6.89	55.56
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.69	55.44
Solyc09g089940.1.1	Tomato	cytosol	51.76	53.06
VIT_01s0146g00440.t01	Wine grape	cytosol, mitochondrion	50.08	52.83
PGSC0003DMT400044378	Potato	cytosol	51.0	52.28
PGSC0003DMT400030583	Potato	cytosol, vacuole	7.81	52.04
KRH75085	Soybean	cytosol, plastid	51.45	52.01
PGSC0003DMT400070342	Potato	cytosol	31.55	51.89
CDY22349	Canola	plastid	47.78	50.98
PGSC0003DMT400030584	Potato	cytosol, plastid	47.47	50.65
CDY09774	Canola	cytosol, plastid	49.16	49.46
Bra033679.1-P	Field mustard	plastid	48.24	48.91
Bra035287.1-P	Field mustard	cytosol	44.1	48.57
AT5G43390.1	Thale cress	cytosol, plastid	47.78	48.52
Bra008847.1-P	Field mustard	nucleus, plastid	49.46	48.5
VIT_05s0049g00650.t01	Wine grape	cytosol	9.8	48.48
AT5G13210.1	Thale cress	cytosol, plastid	49.77	48.29
Solyc01g009530.1.1	Tomato	cytosol	15.77	48.13
AT5G43400.1	Thale cress	plastid	48.24	48.09
VIT_05s0049g00560.t01	Wine grape	cytosol	38.74	47.92
HORVU6Hr1G013080.3	Barley	nucleus, peroxisome	51.15	47.44
HORVU7Hr1G112960.3	Barley	nucleus	44.56	47.01
HORVU5Hr1G079390.2	Barley	cytosol, nucleus, plastid	35.53	42.73
HORVU5Hr1G079400.3	Barley	cytosol, nucleus, plastid	40.89	42.72
AT3G24780.1	Thale cress	nucleus	46.55	42.52
CDX69660	Canola	plastid	21.9	41.57
HORVU5Hr1G081560.3	Barley	nucleus	44.56	41.39
HORVU3Hr1G117270.1	Barley	cytosol	19.14	38.34
CDX99561	Canola	nucleus, plastid	15.47	31.86
CDX86853	Canola	endoplasmic reticulum, extracellular	8.27	29.03

Protein Annotations

EMBL:AK361037	EMBL:AK371149	EnsemblPlants:HORVU6Hr1G029540.1	EnsemblPlantsGene:HORVU6Hr1G029540	InterPro:DUF2828	InterPro:IPR036465
InterPro:UCP015417_vWA	InterPro:vWFA_dom_sf	PANTHER:PTHR31373	PANTHER:PTHR31373:SF3	PFAM:PF11443	PIRSF:PIRSF015417
SEG:seg	SUPFAM:SSF53300	UniParc:UPI0002006273	UniProt:F2DAX3	MapMan:35.2	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DAX3]

Coordinates

chrchr6H:-:120528078..120530866

Molecular Weight (calculated)

70972.9 Da

IEP (calculated)

9.038

GRAVY (calculated)

-0.182

Length

653 amino acids

Sequence
(BLAST)

001: MAGFTLVGPP EAATALGAAA EMKTDGKGKA LTENSSPTFV DLLDASFNME TEMKTDGKGK ALTENSSPTF VSSGDPCLDF FFHVVPGTPA ASVASLLAAA
101: WAADPVTALR LVANLRGVRG SGKSDREGFY AAALWLHARH PATLARNAAS VAAFGYLKDL PELLHRIVHG GKSTRTPGKK ARLEAEGGWF LRRGRGRGRR
201: SGSGGGKGRR EDRVGASEER VAASLERDRK LAAAAAVSRR AKRAGAAARV LDMYSRDSTY RFLHDRTADL FAELLAEDMR KLSVGDVKHF SLAAKWCPSL
301: DSSYDRSTLL CEAIARRLFP RGSSSELGDD LPDAHYAYRA RQRLRRAAMV PLRAALKLPE VFISARAWES VVYTRVASVA MKNYKDLFLK HDAERFNAYL
401: ADVKSGKKRI AAGALLPHQI IESLGEDGDD GGVADLQWQR MVDDMRALGK LNNCVAVCDV SGSMSGLPMD VCIALGLLVS ELTDDPWRGR VITFSERPNI
501: HMIKGETLSE KTEFVRSMDW GMNTDFQAVF DKILEVAVGA GLPAEKMVRR VLVFSDMEFD QASANPWETD YEAIVRKFSE AGYGAAVPEI VFWNLRDSKA
601: VPVMSGQKGV ALVSGFSKNL LKLFLDGGGT FTPRVVMEKA IAGPEYDQLA VFD

Best Arabidopsis Sequence Match ( AT5G13210.1 )
(BLAST)

001: MSPSPLLGPP ELRDPNSLLP KPTTTSGPSD PFMDAMVSNF NNSARVNNVN SPPMGYTENK SATYLSSGNP CLDFFFHVVP STPKHSLEQW LQGAWDHDAL
101: TTLKLICNLR GVRGTGKSDK EGFYTAALWL HGRHPKTLAC NLESLSQFGY FKDFPELLYR ILQGSEIRKI QKSERFKRKS EALDRRAPYD GHCYHGRLYG
201: GRGRGSSRPS SKRKPVATRA LRVANAERKN QAEKARASLD RKKKKVSMGK DAFTRYSCDP DYRYLHERVS DLFANQLKKD LEFLTSDKPN EISLAAKWCP
301: SLDSSFDKAT LLCESIARKI FTRESFPEYE GVVEAHYAYR VRDRLRKDVL VPLRKTLQLP EVYMGARNWD ILPYNRVASV AMKSYKEIFL KHDAERFQQY
401: LDDAKAGKTK VAAGAVLPHE IIRELDGGDG GQVAELQWKR TVDDMKEKGS LRNCIAVCDV SGSMNGEPME VCVALGLLVS ELSEEPWKGK LITFSQNPEL
501: HLVKGDDLYS KTEFVKKMQW GMNTDFQKVF DLILGVAVQE KLKPEEMIKR VFVFSDMEFD QAASSSHYSR PGYAFLRQPP SNPSNGWETD YEVIVRKYKQ
601: NGYGDVVPEI VFWNLRDSRA TPVPGNKKGV ALVSGFSKNL MKMFLEHDGE IDPVMMMETA ISKDEYKSLV VVD

Arabidopsis Description

AT5g13210/T31B5_30 [Source:UniProtKB/TrEMBL;Acc:Q9LYV5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.