Factsheet for Bra008847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69659	Canola	cytosol	39.79	96.01
CDX69660	Canola	plastid	46.4	89.83
Bra035287.1-P	Field mustard	cytosol	65.17	73.19
PGSC0003DMT400030583	Potato	cytosol, vacuole	10.66	72.45
AT5G13210.1	Thale cress	cytosol, plastid	72.67	71.92
Os09t0499500-01	Rice	cytosol	13.21	66.17
PGSC0003DMT400030584	Potato	cytosol, plastid	59.01	64.22
AT3G24780.1	Thale cress	nucleus	66.97	62.38
Solyc01g009530.1.1	Tomato	cytosol	19.37	60.28
KRH75085	Soybean	cytosol, plastid	57.21	58.98
Solyc01g009540.1.1	Tomato	cytosol	8.26	57.89
Bra033679.1-P	Field mustard	plastid	53.45	55.28
TraesCS5A01G319700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	34.38	55.05
GSMUA_AchrUn_...	Banana	cytosol, plastid	47.75	53.27
TraesCS7D01G490500.1	Wheat	cytosol	38.89	52.54
TraesCS6D01G138100.1	Wheat	cytosol, nucleus, peroxisome, plastid	49.55	51.81
Os02t0179600-01	Rice	extracellular	50.75	51.52
TraesCS7B01G410900.1	Wheat	cytosol, nucleus, plastid	36.04	51.39
TraesCS7D01G496700.1	Wheat	cytosol	33.93	51.36
TraesCS6A01G148700.1	Wheat	cytosol	48.8	50.62
OQU84313	Sorghum	mitochondrion	50.6	50.52
TraesCS6B01G176900.1	Wheat	cytosol, nucleus, peroxisome, plastid	49.1	50.46
TraesCS7B01G410500.1	Wheat	mitochondrion, plastid	47.15	50.0
Zm00001d053740_P001	Maize	cytosol	48.8	49.62
HORVU6Hr1G029540.1	Barley	cytosol, nucleus, peroxisome	48.5	49.46
KXG29624	Sorghum	cytosol	48.8	49.09
HORVU7Hr1G112970.1	Barley	cytosol, nucleus	47.3	48.91
EER88742	Sorghum	plastid	48.5	48.79
Os06t0652100-00	Rice	mitochondrion	46.7	48.52
TraesCS7D01G490900.1	Wheat	mitochondrion	47.0	48.38
TraesCS6A01G149200.1	Wheat	cytosol	47.0	48.23
EER93519	Sorghum	mitochondrion	50.15	48.2
TraesCS6B01G177100.1	Wheat	cytosol	45.8	48.18
TraesCS1A01G354300.1	Wheat	cytosol	50.3	47.72
TraesCS5A01G302600.1	Wheat	plastid	50.15	47.65
TraesCS7B01G417500.1	Wheat	cytosol, plastid	48.2	47.63
TraesCS1D01G356100.1	Wheat	cytosol, nucleus, peroxisome	50.3	47.59
EER88676	Sorghum	mitochondrion, plastid	50.45	47.52
TraesCS1B01G367400.1	Wheat	cytosol	50.0	47.44
TraesCS6B01G098400.1	Wheat	cytosol	50.3	47.18
TraesCS6A01G073400.1	Wheat	cytosol, peroxisome, plastid	40.09	47.17
TraesCS5B01G302900.1	Wheat	plastid	49.7	47.08
TraesCS5D01G309300.1	Wheat	plastid	49.4	47.07
TraesCS6D01G071700.1	Wheat	cytosol	50.0	46.9
TraesCS7D01G394600.1	Wheat	cytosol	48.95	46.77
HORVU6Hr1G013080.3	Barley	nucleus, peroxisome	49.4	46.73
TraesCS7B01G301000.1	Wheat	cytosol	49.1	46.71
TraesCS5D01G325700.1	Wheat	cytosol, nucleus, plastid	48.2	46.39
VIT_05s0049g00650.t01	Wine grape	cytosol	9.16	46.21
Zm00001d045614_P001	Maize	mitochondrion	6.31	46.15
TraesCS5B01G319900.1	Wheat	cytosol, nucleus, peroxisome	47.9	45.97
TraesCS3D01G541900.1	Wheat	mitochondrion	33.48	45.05
TraesCS7D01G490400.1	Wheat	mitochondrion	47.15	45.05
TraesCS7A01G503000.1	Wheat	mitochondrion	46.25	44.9
TraesCS7B01G410400.1	Wheat	mitochondrion	47.0	44.65
TraesCS6D01G138500.1	Wheat	mitochondrion, plastid	22.07	43.62
EES01714	Sorghum	plastid	40.39	43.53
TraesCS5B01G302800.1	Wheat	cytosol, plastid	40.99	43.47
TraesCS5A01G302500.1	Wheat	cytosol, plastid	40.99	43.2
TraesCS5B01G320000.1	Wheat	cytosol	48.05	43.18
TraesCS5D01G309200.1	Wheat	plastid	40.69	43.02
KXG37641	Sorghum	plastid	40.24	42.54
Os09t0499400-01	Rice	vacuole	37.69	42.26
TraesCS3B01G607400.1	Wheat	cytosol	40.54	41.8
HORVU5Hr1G079390.2	Barley	cytosol, nucleus, plastid	33.63	41.25
HORVU5Hr1G079400.3	Barley	cytosol, nucleus, plastid	37.99	40.48
HORVU5Hr1G081560.3	Barley	nucleus	41.29	39.12
HORVU7Hr1G112960.3	Barley	nucleus	35.59	38.29
HORVU3Hr1G117270.1	Barley	cytosol	17.57	35.89
Os12t0141800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	8.11	29.51
OQU88215	Sorghum	cytosol	17.12	28.5

Protein Annotations

EnsemblPlants:Bra008847.1	EnsemblPlants:Bra008847.1-P	EnsemblPlantsGene:Bra008847	InterPro:DUF2828	InterPro:IPR036465	InterPro:UCP015417_vWA
InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR31373	PFAM:PF11443	PIRSF:PIRSF015417	SEG:seg
SUPFAM:SSF53300	UniParc:UPI000254397A	UniProt:M4CXA0	MapMan:35.2	:	:

Description

AT5G13210 (E=3e-275) | CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24780.1); Has 250 Blast hits to 233 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 23; Plants - 45; Viruses - 15; Other Eukaryotes - 159 (source: NCBI BLink).

Coordinates

chrA10:-:14096527..14098527

Molecular Weight (calculated)

74869.8 Da

IEP (calculated)

9.576

GRAVY (calculated)

-0.448

Length

666 amino acids

Sequence
(BLAST)

001: MASPLLGPPE LKDSNSPLPT SSPRDPFMDL MVSNFNKSTK VNVSPSPPMG LTENGAATYL SAGNPCLDFF FHVVPSTPKE SIEQRLSTAW SHDALTTLKL
101: ICNLRGVRGT GKSDKEGFYT AALWLHGCHP KTLACNLDSL SKFGYFKDFP EILYRILKGF EIRRVQKSEW LQRKGRRSAP RSGGGRGRGR GRARAPFFID
201: LSRSSHKGRG RKKPAATREM RIANAEKRNQ EEKAKARLDR KLEKITMGKK AFTRYSQDPD YRFLHERVSD LFADYLKKDL EFLASGETNK ISLAAKWCPS
301: LDSSFDKATL LCESIARRIF PRESFPEYEG VEEAHYAYRV RDRLRKQVLV PLRKTLQLPE VYMGAKEWGS LPYNRVASVA MKSYKEIFLN HDAERFQKYL
401: ADAREGNTKI AAGAVLPHEI IGELEGGDGG QVVELQWKRM VDDLKKKGSL TSCIAISDVS GSMTGDPMEV SVALGLLISE LTEEPWRGKM ITFSGDPELQ
501: VVEGDDLRTK TRFVRRMKWG MNTDFQKVFD LILKVAVDGR LKPEEMIKRV FVFSDMEFDQ AATSSSVSYY GGTRQVANTW ETDYEAIAIK YREAGYGDVV
601: PEIVFWNLRD SSSTPVSGSK KGVALVSGFS KNLIKMFLDN DGEINPMAIM EAAISKEEYS KLVVVD

Best Arabidopsis Sequence Match ( AT5G13210.1 )
(BLAST)

001: MSPSPLLGPP ELRDPNSLLP KPTTTSGPSD PFMDAMVSNF NNSARVNNVN SPPMGYTENK SATYLSSGNP CLDFFFHVVP STPKHSLEQW LQGAWDHDAL
101: TTLKLICNLR GVRGTGKSDK EGFYTAALWL HGRHPKTLAC NLESLSQFGY FKDFPELLYR ILQGSEIRKI QKSERFKRKS EALDRRAPYD GHCYHGRLYG
201: GRGRGSSRPS SKRKPVATRA LRVANAERKN QAEKARASLD RKKKKVSMGK DAFTRYSCDP DYRYLHERVS DLFANQLKKD LEFLTSDKPN EISLAAKWCP
301: SLDSSFDKAT LLCESIARKI FTRESFPEYE GVVEAHYAYR VRDRLRKDVL VPLRKTLQLP EVYMGARNWD ILPYNRVASV AMKSYKEIFL KHDAERFQQY
401: LDDAKAGKTK VAAGAVLPHE IIRELDGGDG GQVAELQWKR TVDDMKEKGS LRNCIAVCDV SGSMNGEPME VCVALGLLVS ELSEEPWKGK LITFSQNPEL
501: HLVKGDDLYS KTEFVKKMQW GMNTDFQKVF DLILGVAVQE KLKPEEMIKR VFVFSDMEFD QAASSSHYSR PGYAFLRQPP SNPSNGWETD YEVIVRKYKQ
601: NGYGDVVPEI VFWNLRDSRA TPVPGNKKGV ALVSGFSKNL MKMFLEHDGE IDPVMMMETA ISKDEYKSLV VVD

Arabidopsis Description

AT5g13210/T31B5_30 [Source:UniProtKB/TrEMBL;Acc:Q9LYV5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.