Factsheet for AT3G13830.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G11810.1	Thale cress	cytosol	78.78	78.78
AT1G66490.1	Thale cress	cytosol	40.58	42.5
AT3G49510.1	Thale cress	cytosol	41.91	40.72
AT3G49520.1	Thale cress	cytosol	40.85	39.69
AT1G54550.1	Thale cress	cytosol	37.93	39.5
AT3G13680.1	Thale cress	cytosol	41.38	39.49
AT3G19560.1	Thale cress	cytosol	36.34	37.95
AT3G20030.1	Thale cress	cytosol	39.52	37.06
AT1G59680.2	Thale cress	cytosol	30.24	35.96
AT4G17200.1	Thale cress	cytosol	36.07	35.7
AT3G13820.1	Thale cress	nucleus	38.99	35.42
AT3G19880.1	Thale cress	cytosol	36.34	35.22
AT3G14030.1	Thale cress	cytosol	18.57	35.0
AT1G67450.1	Thale cress	cytosol	36.87	34.92
AT5G51000.1	Thale cress	cytosol	34.48	34.39
AT1G24800.1	Thale cress	nucleus	39.26	34.18
AT1G25211.1	Thale cress	nucleus	39.26	34.18
AT1G25150.1	Thale cress	nucleus	39.26	34.18
AT1G25055.1	Thale cress	nucleus	39.26	34.18
AT1G24881.1	Thale cress	nucleus	39.26	34.18
AT5G60560.2	Thale cress	cytosol	36.07	33.42
AT4G05080.1	Thale cress	cytosol	34.22	32.99
AT3G19890.1	Thale cress	cytosol	35.54	32.68
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	36.07	23.01

Protein Annotations

MapMan:35.1	EntrezGene:820595	UniProt:A0A178VM81	ProteinID:AEE75422.1	ArrayExpress:AT3G13830	EnsemblPlantsGene:AT3G13830
RefSeq:AT3G13830	TAIR:AT3G13830	RefSeq:AT3G13830-TAIR-G	EnsemblPlants:AT3G13830.1	TAIR:AT3G13830.1	Unigene:At.53301
ProteinID:BAB02907.1	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	RefSeq:NP_187999.1	ProteinID:OAP06874.1	PFAM:PF00646	PFAM:PF07734
PFscan:PS50181	PANTHER:PTHR31790	UniProt:Q9LRW4	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00000A98A1
SEG:seg	:	:	:	:	:

Description

Putative F-box protein At3g13830 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW4]

Coordinates

chr3:+:4553943..4555076

Molecular Weight (calculated)

42453.1 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.113

Length

377 amino acids

Sequence
(BLAST)

001: MTTTTTTTMS TLPMVLVDEI LSRVPITSLR SLRSTCKRWE AQSKTNLVGG KATARKSSYL GFILIGNKIC SMKLDLNGGD DFVDTSVNQI SAFDDFEISQ
101: LFHCDGLLLC VSNKHYYSNT VMVCNMYLGE TRLIEHCCLL EGFDNFGSYA FGYDSSKNRN HKIFRKKLVS GGYEIYSFKS DSWKDLNVDL GESTELCELG
201: SVSLKGNAYF SVITKHEEEE LWENNLLCFD FTTESFGKFL SLPFDNVTAE EEFGIMVLSC VRDEHLAVLY QLDTLGIWIS TEIEPNKVSW REFLQVDLYT
301: LDGFPDAFTA GRFIVDEEKQ VVVVFNEATE IDLNHGNAFI FGRDGYFTSF NVGDTPPQDF TSYVPSLASL QIEKTGG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.