Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G24800.1 | Thale cress | nucleus | 100.0 | 100.0 |
| AT1G24881.1 | Thale cress | nucleus | 100.0 | 100.0 |
| AT1G25055.1 | Thale cress | nucleus | 100.0 | 100.0 |
| AT1G25211.1 | Thale cress | nucleus | 100.0 | 100.0 |
| AT3G13680.1 | Thale cress | cytosol | 45.73 | 50.13 |
| AT3G14030.1 | Thale cress | cytosol | 21.94 | 47.5 |
| AT3G49510.1 | Thale cress | cytosol | 42.49 | 47.42 |
| AT4G17200.1 | Thale cress | cytosol | 41.57 | 47.24 |
| AT3G20030.1 | Thale cress | cytosol | 43.65 | 47.01 |
| AT1G66490.1 | Thale cress | cytosol | 39.03 | 46.94 |
| AT3G49520.1 | Thale cress | cytosol | 41.8 | 46.65 |
| CDY40874 | Canola | mitochondrion | 39.49 | 45.6 |
| AT5G60560.2 | Thale cress | cytosol | 42.49 | 45.21 |
| AT1G54550.1 | Thale cress | cytosol | 37.64 | 45.03 |
| AT3G19880.1 | Thale cress | cytosol | 39.95 | 44.47 |
| AT3G19890.1 | Thale cress | cytosol | 40.42 | 42.68 |
| AT3G19560.1 | Thale cress | cytosol | 35.33 | 42.38 |
| AT4G05080.1 | Thale cress | cytosol | 38.11 | 42.2 |
| AT5G51000.1 | Thale cress | cytosol | 36.03 | 41.27 |
| AT1G59680.2 | Thale cress | cytosol | 30.02 | 41.01 |
| AT1G11810.1 | Thale cress | cytosol | 34.64 | 39.79 |
| AT3G13820.1 | Thale cress | nucleus | 38.11 | 39.76 |
| AT3G13830.1 | Thale cress | plastid | 34.18 | 39.26 |
| AT1G67450.1 | Thale cress | cytosol | 35.8 | 38.94 |
| AT1G32140.1 | Thale cress | cytosol, peroxisome, plastid | 41.34 | 30.29 |
Protein Annotations
| EntrezGene:10723103 | MapMan:35.1 | EntrezGene:6240216 | EntrezGene:6241002 | EntrezGene:6241166 | EntrezGene:6241255 |
| UniProt:A0A178W943 | ProteinID:AAG03124.1 | ProteinID:AAG03126.1 | ProteinID:AAG03128.1 | ProteinID:AAG03130.1 | ProteinID:AAG28816.2 |
| ProteinID:AAG40091.1 | ProteinID:AEE30564.1 | ProteinID:AEE30571.1 | ProteinID:AEE30577.1 | ProteinID:AEE30583.1 | ProteinID:AEE30588.1 |
| EMBL:AK118531 | EMBL:AK221705 | EMBL:AK221721 | EMBL:AK221815 | EMBL:AK227908 | EMBL:AK228522 |
| EMBL:AK229710 | EMBL:AK230005 | EMBL:AK230082 | ProteinID:ANM60084.1 | ArrayExpress:AT1G25150 | EnsemblPlantsGene:AT1G25150 |
| RefSeq:AT1G25150 | TAIR:AT1G25150 | RefSeq:AT1G25150-TAIR-G | EnsemblPlants:AT1G25150.1 | TAIR:AT1G25150.1 | EMBL:AY080666 |
| EMBL:AY150377 | EMBL:BT010324 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | RefSeq:NP_001117347.1 | RefSeq:NP_001117348.1 | RefSeq:NP_001117350.1 |
| RefSeq:NP_001117352.1 | RefSeq:NP_001185091.1 | RefSeq:NP_001319077.1 | ProteinID:OAP14858.1 | UniProt:P0DI02 | UniProt:P0DI03 |
| UniProt:P0DI04 | UniProt:P0DI05 | UniProt:P0DI06 | PFAM:PF00646 | PFAM:PF07734 | PO:PO:0000293 |
| PANTHER:PTHR31790 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000AE5A9 | SEG:seg |
Description
F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
Coordinates
chr1:+:8821008..8822843
Molecular Weight (calculated)
49646.3 Da
IEP (calculated)
7.258
GRAVY (calculated)
-0.363
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.