Factsheet for AT3G19880.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G05080.1	Thale cress	cytosol	52.7	52.43
AT3G20030.1	Thale cress	cytosol	51.67	50.0
AT5G60560.2	Thale cress	cytosol	49.61	47.42
AT3G19890.1	Thale cress	cytosol	48.84	46.34
AT1G66490.1	Thale cress	cytosol	42.42	45.83
AT3G19560.1	Thale cress	cytosol	41.65	44.88
AT3G49510.1	Thale cress	cytosol	43.7	43.81
AT3G13680.1	Thale cress	cytosol	44.22	43.54
AT1G67450.1	Thale cress	cytosol	44.22	43.22
AT4G17200.1	Thale cress	cytosol	41.9	42.78
AT3G49520.1	Thale cress	cytosol	41.13	41.24
AT1G24800.1	Thale cress	nucleus	44.47	39.95
AT1G25211.1	Thale cress	nucleus	44.47	39.95
AT1G25150.1	Thale cress	nucleus	44.47	39.95
AT1G25055.1	Thale cress	nucleus	44.47	39.95
AT1G24881.1	Thale cress	nucleus	44.47	39.95
AT1G54550.1	Thale cress	cytosol	37.02	39.78
AT1G59680.2	Thale cress	cytosol	32.13	39.43
AT3G13820.1	Thale cress	nucleus	41.9	39.28
AT5G51000.1	Thale cress	cytosol	37.79	38.89
AT3G14030.1	Thale cress	cytosol	19.54	38.0
AT3G13830.1	Thale cress	plastid	35.22	36.34
AT1G11810.1	Thale cress	cytosol	34.19	35.28
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	51.93	34.18

Protein Annotations

MapMan:35.1	EntrezGene:821525	ProteinID:AEE76303.1	ArrayExpress:AT3G19880	EnsemblPlantsGene:AT3G19880	RefSeq:AT3G19880
TAIR:AT3G19880	RefSeq:AT3G19880-TAIR-G	EnsemblPlants:AT3G19880.1	TAIR:AT3G19880.1	Unigene:At.64121	ProteinID:BAB01302.1
EMBL:DQ056597	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	RefSeq:NP_188622.1	PFAM:PF00646	PFAM:PF07734	PANTHER:PTHR31790
UniProt:Q9LT21	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00000A15F0	SEG:seg

Description

F-box protein At3g19880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT21]

Coordinates

chr3:-:6911435..6912604

Molecular Weight (calculated)

45078.3 Da

IEP (calculated)

5.578

GRAVY (calculated)

-0.215

Length

389 amino acids

Sequence
(BLAST)

001: MTMMSDLTQD LVEEILSRVP ITSLGAVRST CKGWNALSKE RILCIGEPKQ QFLGFMMLDY RLCSMRFNLH GILNEDFVSI SMYQVETSQV FYCAGLLLCV
101: TREKSSRLII WNPYLGQTRW INTKTTKTGY NTYALGCDNN KNHKILKVFC DDYQCYYEIY DVKSNSWSAF NVTDPNWHID YDICALVNGN TYFLTKERIL
201: VEDSDEDEDE VETPEILICF DFTAERFGKF LHLPFQFDID FGDTGGLSCV KEEKLAVLLK RYDQNVIEIW VTTKIEPNVV FWKPFLKVDI ETVLGALLDF
301: QLDSFFIDEE KKLAVVFSSN KSKCYKTAYI IGEDRYLKEV DLGECKPLRS PIVCFSSYVP SLVQINQIAV PKRRENKRKR KSKGKGREV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.