Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G20030.1 | Thale cress | cytosol | 48.05 | 49.01 |
| AT3G19880.1 | Thale cress | cytosol | 46.34 | 48.84 |
| AT5G60560.2 | Thale cress | cytosol | 46.1 | 46.44 |
| AT1G66490.1 | Thale cress | cytosol | 39.76 | 45.28 |
| AT3G13680.1 | Thale cress | cytosol | 42.44 | 44.05 |
| AT4G05080.1 | Thale cress | cytosol | 40.98 | 42.97 |
| AT1G54550.1 | Thale cress | cytosol | 37.32 | 42.27 |
| AT3G49510.1 | Thale cress | cytosol | 39.76 | 42.01 |
| AT4G17200.1 | Thale cress | cytosol | 38.78 | 41.73 |
| AT3G49520.1 | Thale cress | cytosol | 38.54 | 40.72 |
| AT3G19560.1 | Thale cress | cytosol | 35.85 | 40.72 |
| AT1G24800.1 | Thale cress | nucleus | 42.68 | 40.42 |
| AT1G25211.1 | Thale cress | nucleus | 42.68 | 40.42 |
| AT1G25150.1 | Thale cress | nucleus | 42.68 | 40.42 |
| AT1G25055.1 | Thale cress | nucleus | 42.68 | 40.42 |
| AT1G24881.1 | Thale cress | nucleus | 42.68 | 40.42 |
| AT5G51000.1 | Thale cress | cytosol | 35.85 | 38.89 |
| AT3G13820.1 | Thale cress | nucleus | 39.27 | 38.8 |
| AT1G67450.1 | Thale cress | cytosol | 37.07 | 38.19 |
| AT3G14030.1 | Thale cress | cytosol | 18.29 | 37.5 |
| AT1G59680.2 | Thale cress | cytosol | 28.54 | 36.91 |
| AT3G13830.1 | Thale cress | plastid | 32.68 | 35.54 |
| AT1G11810.1 | Thale cress | cytosol | 31.46 | 34.22 |
| AT1G32140.1 | Thale cress | cytosol, peroxisome, plastid | 46.1 | 31.98 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821526 | UniProt:A0A178VGR5 | ProteinID:AEE76304.1 | ArrayExpress:AT3G19890 | EnsemblPlantsGene:AT3G19890 |
| RefSeq:AT3G19890 | TAIR:AT3G19890 | RefSeq:AT3G19890-TAIR-G | EnsemblPlants:AT3G19890.1 | TAIR:AT3G19890.1 | Unigene:At.62402 |
| ProteinID:BAB01303.1 | EMBL:DQ056598 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | RefSeq:NP_188623.1 | ProteinID:OAP04868.1 |
| PFAM:PF00646 | PFAM:PF07734 | PO:PO:0000084 | PO:PO:0000282 | PANTHER:PTHR31790 | UniProt:Q4PSN8 |
| SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000016347B | SEG:seg | : |
Description
F-box protein At3g19890 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSN8]
Coordinates
chr3:-:6914910..6916142
Molecular Weight (calculated)
47898.3 Da
IEP (calculated)
8.557
GRAVY (calculated)
-0.558
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMISDLSKD LVEEILSKAP ITSLGAVRST HKQWNALSKG RLLYKAEAKD QFLGFMVMDH RFLSMIFHLN GILKGDGEGF DRPSIREVGD IVNQIDISKV
101: FQCDGLVLCV PSDNSSVVVW NPYLGQTKWI EAREPHDESD MFALGYDKDK NHKILRLYDE CYYYYEVYNF KTESWGEEDH LPGWDIDSYN RGVSLNGNTY
201: FLTQEQRAKD KYRVFLLCFN FTTEKFENFI AMPFKYHRKY VGTLSCVGNE KLAALYQRWD TGEMAIWVTT KIESNEVLWS NLFKVDMKPL VRFGFQQCKD
301: EAGSFFIDEE KKLAVVFNLD KKRGKRNNKT RCYHTAYIIG EKGYLKKEVL GEAVEVRKDV YRSALVCSSS YVPSLEKINQ IEEEEEDKCK SIKMVDTKRQ
401: RKKRKRKSKR
101: FQCDGLVLCV PSDNSSVVVW NPYLGQTKWI EAREPHDESD MFALGYDKDK NHKILRLYDE CYYYYEVYNF KTESWGEEDH LPGWDIDSYN RGVSLNGNTY
201: FLTQEQRAKD KYRVFLLCFN FTTEKFENFI AMPFKYHRKY VGTLSCVGNE KLAALYQRWD TGEMAIWVTT KIESNEVLWS NLFKVDMKPL VRFGFQQCKD
301: EAGSFFIDEE KKLAVVFNLD KKRGKRNNKT RCYHTAYIIG EKGYLKKEVL GEAVEVRKDV YRSALVCSSS YVPSLEKINQ IEEEEEDKCK SIKMVDTKRQ
401: RKKRKRKSKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.