Factsheet for AT3G19560.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G51000.1	Thale cress	cytosol	50.42	48.15
CDY23772	Canola	cytosol	33.52	45.49
AT3G13680.1	Thale cress	cytosol	47.37	43.29
Bra021825.1-P	Field mustard	cytosol	35.73	43.29
AT3G20030.1	Thale cress	cytosol	48.2	43.28
AT1G66490.1	Thale cress	cytosol	42.11	42.22
AT3G19880.1	Thale cress	cytosol	44.88	41.65
AT5G60560.2	Thale cress	cytosol	45.98	40.79
CDY69271	Canola	cytosol	40.72	40.38
Bra021823.1-P	Field mustard	cytosol	40.44	40.11
AT1G54550.1	Thale cress	cytosol	39.89	39.78
AT3G14030.1	Thale cress	cytosol	21.88	39.5
AT3G49510.1	Thale cress	cytosol	42.38	39.43
AT3G49520.1	Thale cress	cytosol	42.11	39.18
AT4G05080.1	Thale cress	cytosol	41.83	38.62
AT1G67450.1	Thale cress	cytosol	42.38	38.44
AT4G17200.1	Thale cress	cytosol	40.17	38.06
AT3G13830.1	Thale cress	plastid	37.95	36.34
AT3G19890.1	Thale cress	cytosol	40.72	35.85
AT1G11810.1	Thale cress	cytosol	37.4	35.81
AT1G25211.1	Thale cress	nucleus	42.38	35.33
AT1G25150.1	Thale cress	nucleus	42.38	35.33
AT1G25055.1	Thale cress	nucleus	42.38	35.33
AT1G24881.1	Thale cress	nucleus	42.38	35.33
AT1G24800.1	Thale cress	nucleus	42.38	35.33
AT3G13820.1	Thale cress	nucleus	39.61	34.46
AT1G59680.2	Thale cress	cytosol	29.92	34.07
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	45.15	27.58

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:821493	ProteinID:AEE76258.1	ArrayExpress:AT3G19560	EnsemblPlantsGene:AT3G19560
RefSeq:AT3G19560	TAIR:AT3G19560	RefSeq:AT3G19560-TAIR-G	EnsemblPlants:AT3G19560.1	TAIR:AT3G19560.1	Unigene:At.53389
ProteinID:BAB02540.1	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	RefSeq:NP_188590.2	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	UniProt:Q9LJP0	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0001E92D9C	:	:	:	:	:

Description

Putative F-box protein At3g19560 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJP0]

Coordinates

chr3:+:6793311..6794802

Molecular Weight (calculated)

42009.5 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.197

Length

361 amino acids

Sequence
(BLAST)

001: MCMTMMSDIS QDLLEEILSR VPITSLRAVK STCKRWKDLL NDPSFSKKYG GKRDNEFLAI MTSGSRASLM SVNLHGPRDN KDLEDPFIKQ IGELNQDQIF
101: KVFHCDGLLL CITNEDNTRL VVWNPYLAQT RCIQPIDKFY IYDWYCLGYD KDKNHKILVV YSPMFGRIEY EIYSFLSKSW IVLSFPTDWQ ISRDECLSLK
201: GNTYFIAYKK MEVEEVGFQE FLLCFDFTNE RFGPLLPLPF QCYNQTSLVL STVQEEQLAV LCKRCDAYET KIWITTKIEP NAVSWSYFLK FDFKVDISGG
301: SFFVDVEEKV AVLFCINREK EKGINNKTYM IGEDGYYKEV DLGESNWCPS MCSYVPSCVQ V

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.