Factsheet for Bra021825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23772	Canola	cytosol	87.25	97.74
Bra021823.1-P	Field mustard	cytosol	63.42	51.92
AT3G19560.1	Thale cress	cytosol	43.29	35.73
Bra022464.1-P	Field mustard	cytosol	44.63	34.91
AT5G51000.1	Thale cress	cytosol	42.95	33.86
Bra001764.1-P	Field mustard	cytosol	44.3	33.17
Bra001800.1-P	Field mustard	cytosol	42.95	31.68
Bra001803.1-P	Field mustard	cytosol	38.93	31.1
Bra020991.1-P	Field mustard	cytosol	39.6	29.43
Bra017228.1-P	Field mustard	cytosol	24.83	29.02
Bra021512.1-P	Field mustard	plastid	37.58	28.57
Bra018376.1-P	Field mustard	cytosol	22.15	28.33
Bra024829.1-P	Field mustard	cytosol	37.92	27.83
Bra029507.1-P	Field mustard	cytosol	36.91	27.78
Bra017242.1-P	Field mustard	cytosol	35.57	27.32
Bra041045.1-P	Field mustard	nucleus	33.89	26.65
Bra013348.1-P	Field mustard	cytosol	33.22	26.61
Bra002578.1-P	Field mustard	cytosol	33.22	26.61
Bra017247.1-P	Field mustard	mitochondrion	30.54	26.61
Bra024830.1-P	Field mustard	nucleus, plastid	38.93	26.24
Bra041044.1-P	Field mustard	cytosol	28.19	25.69
Bra017069.1-P	Field mustard	cytosol	32.89	25.45
Bra033383.1-P	Field mustard	cytosol	32.89	25.39
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	27.85	21.07
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	25.17	21.01

Protein Annotations

EnsemblPlants:Bra021825.1	EnsemblPlants:Bra021825.1-P	EnsemblPlantsGene:Bra021825	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PFAM:PF00646	PFAM:PF07734	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00025452CA	UniProt:M4DZ78	MapMan:35.1	:	:	:

Description

AT1G11810 (E=9e-029) | F-box family protein

Coordinates

chrA04:+:14737675..14738686

Molecular Weight (calculated)

34552.8 Da

IEP (calculated)

7.876

GRAVY (calculated)

-0.200

Length

298 amino acids

Sequence
(BLAST)

001: MTMITDLSLD LVEEILSKVS LTSLKAVKYT CKGWNTLSKD ESFTKKHSAI EFPVFLTCKA YRFQRRFNLH RIHNIKDLPC IKETGELHSP IGLYIVNQCD
101: GLLLCLDEGN RQRLFHEIYD FKSSSWRVLD IITPRNFKRI WKRGVSLKGN SYFAVDGKIL CFDFTREKFG PFLDLPFETH NKIPYSCVRG EQLAVLFQRH
201: LYELVIWITT EIKPDAVSWS SFCKVDMKPF LGDHGFKVGS FVIDKEKKVA VVSGDCEERR DHIYKGQCYV VGEDGCYQEK TDMEDIVISY VPSLVQLQ

Best Arabidopsis Sequence Match ( AT1G32140.1 )
(BLAST)

001: MTMMSDLSLD LVEEILCRVP ITSLKAVRSS CKLWNVLSKN RILCKTEARN QFLGFTIMNH RLYSMRFNLH GIGLNENSEE FIDPSIKPIG NLLNQVEISK
101: VFYCEGLLLC VTRNHSSKLV VWNPYLGEIR WIKTRNDYHI GVTYALGYDN NKNHMILRFF SEQGYYEIYD MNSSDSWDCF YGIPNKGLKC YQPGASLNGN
201: AYFLTEGREV MEGYDCLLGF DFTTKKFGPL LSLSFSHDFI ETGRLSCVKG EKLAVLYQRC YTYEMEVWVT TKIEPNAVSW SKFLAVEMEP LTSLKFNDDS
301: GSFFIDEEKK IVVVFDIDES ERNNTAYIIG DYGCLKEVDL DEVVNPQESV EVGDRIYSFS PFVCSCSYVP SLVKFKEDAE HERKDKKRKS KRKRTNKDGY
401: DFILCFDFTT ERFGQILPLP FKHSFRDTWT LSSVKEEKLA VAVLYWKNTC VMIEIWMTIK IDPNVESWSK FLRVDRKPCI DLRFDDRNDS FFIDEEKKVV
501: VFFSSDKVKT STAYVIGDNR YLRTVDLEKA ANSQESVEVG ERVYCFSPLV CSCSYYVPSL VKINHNAGRK RKEKKTKRKS KDKQMKLSNK V

Arabidopsis Description

Putative F-box protein At1g32140 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ9]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.