Factsheet for Bra017242.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43730	Canola	cytosol	60.31	92.13
CDY43729	Canola	cytosol	88.4	89.32
Bra041044.1-P	Field mustard	cytosol	57.73	68.5
Bra017247.1-P	Field mustard	mitochondrion	57.99	65.79
Bra017228.1-P	Field mustard	cytosol	42.01	63.92
Bra041045.1-P	Field mustard	nucleus	59.54	60.95
AT3G13680.1	Thale cress	cytosol	55.67	54.68
Bra021512.1-P	Field mustard	plastid	47.68	47.19
Bra001803.1-P	Field mustard	cytosol	41.24	42.9
Bra024829.1-P	Field mustard	cytosol	44.33	42.36
Bra022464.1-P	Field mustard	cytosol	40.46	41.21
Bra001764.1-P	Field mustard	cytosol	41.75	40.7
Bra002578.1-P	Field mustard	cytosol	38.92	40.59
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	36.08	39.22
Bra018376.1-P	Field mustard	cytosol	23.45	39.06
Bra033383.1-P	Field mustard	cytosol	38.4	38.6
Bra020991.1-P	Field mustard	cytosol	39.43	38.15
Bra001800.1-P	Field mustard	cytosol	39.69	38.12
Bra024830.1-P	Field mustard	nucleus, plastid	43.04	37.78
Bra017069.1-P	Field mustard	cytosol	37.37	37.66
Bra029507.1-P	Field mustard	cytosol	37.63	36.87
Bra013348.1-P	Field mustard	cytosol	34.54	36.02
Bra021825.1-P	Field mustard	cytosol	27.32	35.57
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	35.82	35.28
Bra021823.1-P	Field mustard	cytosol	30.67	32.69

Protein Annotations

EnsemblPlants:Bra017242.1	EnsemblPlants:Bra017242.1-P	EnsemblPlantsGene:Bra017242	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PFAM:PF00646	PFAM:PF07734	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0002544068	UniProt:M4DL61	MapMan:35.1	:	:

Description

AT3G13680 (E=2e-120) | F-box family protein

Coordinates

chrA04:+:15787442..15788608

Molecular Weight (calculated)

44387.9 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.085

Length

388 amino acids

Sequence
(BLAST)

001: MKTIFDLPGE LLEDEIFSRV AMTSLRSVRS TCRKWNSLCK NRILFGKAAA AKKQFMMMDS RICLMNLDLP KDDGDPSIKQ VSLLDQIEIS KVFQCNGLLL
101: CVLKDCSRLL VWNPYLAQTR CIEPRISFQS SDRFAVGHHD NNLNHKILRI SDEIHPVTSK HVLGFELYDF SSGSWKVLDV TPHWEIWSHL RGVSLKGNAY
201: FPAQKKIIEA GTKIRRVAGF FLCFDFTTES FGPLLPLPFQ SQHGGVFTSL SCVREDQLAV LYQHWEAQET VEISVTDKIG PNVVSWTKFL KLVTSFCLHP
301: YSGSFFIDEE KKIAVVFVLE RAKACRYQTA HVIGQDGYFK SVRIREAPDL GNTFHHHERY CAPLVCSSFR PCLVQLQIKQ PTVLMERM

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.