Factsheet for Bra018376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45456	Canola	cytosol	90.56	89.79
AT3G49510.1	Thale cress	cytosol	47.21	28.35
Bra017228.1-P	Field mustard	cytosol	30.9	28.24
AT3G49520.1	Thale cress	cytosol	42.92	25.77
Bra017247.1-P	Field mustard	mitochondrion	36.48	24.85
Bra001764.1-P	Field mustard	cytosol	40.77	23.87
AT1G54550.1	Thale cress	cytosol	36.48	23.48
Bra017242.1-P	Field mustard	cytosol	39.06	23.45
Bra001803.1-P	Field mustard	cytosol	37.34	23.32
Bra041044.1-P	Field mustard	cytosol	32.19	22.94
Bra022464.1-P	Field mustard	cytosol	37.34	22.83
Bra021825.1-P	Field mustard	cytosol	28.33	22.15
Bra001800.1-P	Field mustard	cytosol	38.2	22.03
Bra021512.1-P	Field mustard	plastid	36.91	21.94
Bra041045.1-P	Field mustard	nucleus	34.76	21.37
Bra020991.1-P	Field mustard	cytosol	35.62	20.7
Bra024829.1-P	Field mustard	cytosol	36.05	20.69
Bra002578.1-P	Field mustard	cytosol	32.62	20.43
Bra013348.1-P	Field mustard	cytosol	32.62	20.43
Bra033383.1-P	Field mustard	cytosol	33.05	19.95
Bra021823.1-P	Field mustard	cytosol	30.9	19.78
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	33.05	19.54
Bra017069.1-P	Field mustard	cytosol	32.19	19.48
Bra029507.1-P	Field mustard	cytosol	31.33	18.43
Bra024830.1-P	Field mustard	nucleus, plastid	33.48	17.65
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	23.61	15.41

Protein Annotations

EnsemblPlants:Bra018376.1	EnsemblPlants:Bra018376.1-P	EnsemblPlantsGene:Bra018376	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF07734	SEG:seg
SUPFAM:SSF117281	TIGRFAMs:TIGR01640	UniParc:UPI0002547D5C	UniProt:M4DPD5	MapMan:35.1	:

Description

AT3G49510 (E=3e-045) | F-box family protein

Coordinates

chrA05:-:7836197..7836898

Molecular Weight (calculated)

27611.9 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.016

Length

233 amino acids

Sequence
(BLAST)

001: MYLLGYDNNN HHKILSFSIV DSNIKDIEVY CFSSDTWRVL DVGPMYCNLY SKIFVSLKGN TYFCSPDHAS EEKNGLFCFD FTTERFGPLL PLPPPFHSGY
101: YKVTDIISSN EKLVLLHNAY VCEKVEIWIT TKIEPNLVLW NKFWTLDWYF IKGLFPDDYW LYFDCRSWFI DEEKKVVVFF DITPKTCFFQ MAYIIGEDGY
201: FRSVNLGAAP YPEWVYHNIE YYIYVPSLVQ VQV

Best Arabidopsis Sequence Match ( AT3G49510.1 )
(BLAST)

001: MTTISDLSDD LVGDILSRVP FTSLISVRST CKKWNALSKN QIFGRKTAAR NQFLEFMILD SRVCSLRLDL QGIRNEDKED FVDPSMKLIS IPSNDDQVEI
101: SQVYHCDGLL LCIAKENSNV FVWNPYLGQT KWIRPRNTFH RYDRFALGYD NNRNHKILRF LYDEESNESS RRTHIDVYDF SSDSWRVLDV NPDCDIPFYQ
201: TGVSLKGNTY FFGQEVTQAT KVTEIETCLL CFDFTTERFG PCLPLLFYPP CPSFETVTLS WVRDEKLAVL YNHYVTAEII EIRISTKIEP NAVSWSSFLT
301: VDMSLVNGLP DHFSMYFEAK SFFIDEEKKV VVLFDSKEIK TCRYQMAYIV GDDGYFKSVN IGVSPNSQRK PGRLVCSSYV PSLVQLQD

Arabidopsis Description

F-box protein At3g49510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.