Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018376.1-P | Field mustard | cytosol | 89.79 | 90.56 |
| CDY70219 | Canola | cytosol | 28.09 | 37.08 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 28.94 | 35.05 |
| CDY37490 | Canola | mitochondrion | 24.26 | 33.93 |
| CDY32393 | Canola | mitochondrion | 32.34 | 32.48 |
| CDY65844 | Canola | extracellular | 35.32 | 31.09 |
| AT3G49510.1 | Thale cress | cytosol | 46.38 | 28.09 |
| CDY01863 | Canola | cytosol | 29.36 | 27.71 |
| CDX84915 | Canola | cytosol | 37.45 | 26.19 |
| AT3G49520.1 | Thale cress | cytosol | 42.55 | 25.77 |
| CDY43729 | Canola | cytosol | 40.85 | 25.0 |
| CDY25355 | Canola | cytosol | 37.45 | 23.72 |
| CDY40874 | Canola | mitochondrion | 37.45 | 23.47 |
| AT1G54550.1 | Thale cress | cytosol | 35.32 | 22.93 |
| CDX82277 | Canola | cytosol | 38.72 | 22.86 |
| CDY32394 | Canola | cytosol | 37.02 | 22.77 |
| CDY67601 | Canola | cytosol | 37.02 | 22.77 |
| CDY19516 | Canola | cytosol | 34.04 | 22.73 |
| CDY70726 | Canola | cytosol | 21.28 | 22.52 |
| CDY67602 | Canola | cytosol | 34.47 | 22.38 |
| CDY62603 | Canola | cytosol | 36.17 | 22.37 |
| CDY69763 | Canola | cytosol | 24.26 | 22.35 |
| CDY22955 | Canola | cytosol | 18.72 | 22.22 |
| CDY43733 | Canola | cytosol | 30.64 | 22.15 |
| CDY33422 | Canola | cytosol | 39.15 | 21.7 |
| CDX82230 | Canola | cytosol | 37.02 | 21.53 |
| CDY23772 | Canola | cytosol | 24.26 | 21.43 |
| CDY17608 | Canola | cytosol | 36.6 | 21.18 |
| CDY71567 | Canola | cytosol | 36.17 | 21.14 |
| CDY33027 | Canola | cytosol | 33.19 | 20.42 |
| CDY71800 | Canola | cytosol | 32.77 | 20.26 |
| CDX80282 | Canola | cytosol | 33.19 | 20.16 |
| CDY03068 | Canola | nucleus | 34.47 | 19.9 |
| CDY56208 | Canola | nucleus | 33.19 | 19.7 |
| CDX78894 | Canola | cytosol | 31.06 | 19.62 |
| CDY07015 | Canola | cytosol | 31.91 | 19.48 |
| CDY69271 | Canola | cytosol | 29.36 | 18.96 |
| CDX93257 | Canola | cytosol | 31.06 | 18.77 |
| CDX82226 | Canola | cytosol | 20.85 | 18.63 |
| CDY43730 | Canola | cytosol | 20.0 | 18.5 |
| CDY17609 | Canola | plastid | 33.62 | 17.83 |
| CDY03069 | Canola | plastid | 33.19 | 17.49 |
| CDY37492 | Canola | cytosol | 15.74 | 17.05 |
| CDY68693 | Canola | cytosol | 34.04 | 16.63 |
| CDY37477 | Canola | nucleus | 12.77 | 16.04 |
| CDY57669 | Canola | cytosol | 26.38 | 15.7 |
| CDX72756 | Canola | cytosol | 27.23 | 15.31 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 22.98 | 15.13 |
| CDY67865 | Canola | cytosol | 30.64 | 14.57 |
| CDX94566 | Canola | cytosol | 8.09 | 8.76 |
| CDX99431 | Canola | cytosol | 7.23 | 8.5 |
| CDY43731 | Canola | cytosol | 5.11 | 6.86 |
| CDY45455 | Canola | cytosol | 2.98 | 6.6 |
| CDY37491 | Canola | cytosol | 2.13 | 5.15 |
| CDX78893 | Canola | cytosol | 3.4 | 4.94 |
| CDY70218 | Canola | plastid | 1.28 | 3.85 |
Protein Annotations
| EnsemblPlants:CDY45456 | EnsemblPlantsGene:GSBRNA2T00082078001 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | PFAM:PF07734 | ProteinID:CDY45456 |
| ProteinID:CDY45456.1 | SEG:seg | TIGRFAMs:TIGR01640 | UniParc:UPI0004EE2D5E | UniProt:A0A078I6E0 | MapMan:35.1 |
Description
BnaA05g12450DBnaA05g12450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6E0]
Coordinates
chrLK032625:+:176898..177605
Molecular Weight (calculated)
27830.1 Da
IEP (calculated)
4.664
GRAVY (calculated)
-0.045
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVLGYDNNN NHKILSFSIV DSNIKDIELY CFSSDTWRVL DVCPVYCNLN SKFFVSLKGN TYFCSPDHAS EEKNGLFCFD FTTERFGPLL PLPPPFHSGY
101: YKVTDIISSN EKLVLLHNAY VCEKVEIWIT TKIEPNVVLW NKFWTLDWYF IKGLFPDDYW LYFDCRSWFI DEEKKVVVFF DITPKTCFFQ MAYIIGEDGY
201: FRSVNLGAAP YPEWVYHNIE YYNYVPSLVQ LQLQV
101: YKVTDIISSN EKLVLLHNAY VCEKVEIWIT TKIEPNVVLW NKFWTLDWYF IKGLFPDDYW LYFDCRSWFI DEEKKVVVFF DITPKTCFFQ MAYIIGEDGY
201: FRSVNLGAAP YPEWVYHNIE YYNYVPSLVQ LQLQV
001: MTTISDLSDD LVGDILSRVP FTSLISVRST CKKWNALSKN QIFGRKTAAR NQFLEFMILD SRVCSLRLDL QGIRNEDKED FVDPSMKLIS IPSNDDQVEI
101: SQVYHCDGLL LCIAKENSNV FVWNPYLGQT KWIRPRNTFH RYDRFALGYD NNRNHKILRF LYDEESNESS RRTHIDVYDF SSDSWRVLDV NPDCDIPFYQ
201: TGVSLKGNTY FFGQEVTQAT KVTEIETCLL CFDFTTERFG PCLPLLFYPP CPSFETVTLS WVRDEKLAVL YNHYVTAEII EIRISTKIEP NAVSWSSFLT
301: VDMSLVNGLP DHFSMYFEAK SFFIDEEKKV VVLFDSKEIK TCRYQMAYIV GDDGYFKSVN IGVSPNSQRK PGRLVCSSYV PSLVQLQD
101: SQVYHCDGLL LCIAKENSNV FVWNPYLGQT KWIRPRNTFH RYDRFALGYD NNRNHKILRF LYDEESNESS RRTHIDVYDF SSDSWRVLDV NPDCDIPFYQ
201: TGVSLKGNTY FFGQEVTQAT KVTEIETCLL CFDFTTERFG PCLPLLFYPP CPSFETVTLS WVRDEKLAVL YNHYVTAEII EIRISTKIEP NAVSWSSFLT
301: VDMSLVNGLP DHFSMYFEAK SFFIDEEKKV VVLFDSKEIK TCRYQMAYIV GDDGYFKSVN IGVSPNSQRK PGRLVCSSYV PSLVQLQD
Arabidopsis Description
F-box protein At3g49510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.