Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99431 | Canola | cytosol | 69.75 | 56.5 |
| CDY70218 | Canola | plastid | 20.37 | 42.31 |
| CDY37491 | Canola | cytosol | 21.6 | 36.08 |
| CDY71567 | Canola | cytosol | 86.42 | 34.83 |
| CDY43731 | Canola | cytosol | 37.04 | 34.29 |
| CDY45455 | Canola | cytosol | 21.6 | 33.02 |
| CDX94566 | Canola | cytosol | 43.21 | 32.26 |
| CDY37492 | Canola | cytosol | 40.74 | 30.41 |
| CDY43730 | Canola | cytosol | 41.36 | 26.38 |
| CDY37477 | Canola | nucleus | 29.63 | 25.67 |
| CDX78894 | Canola | cytosol | 56.17 | 24.46 |
| CDY33027 | Canola | cytosol | 46.91 | 19.9 |
| CDY67602 | Canola | cytosol | 44.44 | 19.89 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 43.83 | 19.89 |
| CDX80282 | Canola | cytosol | 46.91 | 19.64 |
| CDY71800 | Canola | cytosol | 45.68 | 19.47 |
| CDX82226 | Canola | cytosol | 31.48 | 19.39 |
| CDY25355 | Canola | cytosol | 43.83 | 19.14 |
| CDX82277 | Canola | cytosol | 46.91 | 19.1 |
| CDY17608 | Canola | cytosol | 47.53 | 18.97 |
| CDY67601 | Canola | cytosol | 44.44 | 18.85 |
| CDY43733 | Canola | cytosol | 37.65 | 18.77 |
| CDY03068 | Canola | nucleus | 46.3 | 18.43 |
| CDY32394 | Canola | cytosol | 43.21 | 18.32 |
| CDY07015 | Canola | cytosol | 43.21 | 18.18 |
| CDX82230 | Canola | cytosol | 45.06 | 18.07 |
| CDY19516 | Canola | cytosol | 38.89 | 17.9 |
| CDX93257 | Canola | cytosol | 41.98 | 17.48 |
| CDY43729 | Canola | cytosol | 41.36 | 17.45 |
| CDY03069 | Canola | plastid | 47.53 | 17.26 |
| CDY69763 | Canola | cytosol | 27.16 | 17.25 |
| CDY33422 | Canola | cytosol | 45.06 | 17.22 |
| CDY17609 | Canola | plastid | 46.3 | 16.93 |
| CDY62603 | Canola | cytosol | 38.27 | 16.32 |
| CDY69271 | Canola | cytosol | 36.42 | 16.21 |
| CDY22955 | Canola | cytosol | 19.75 | 16.16 |
| CDY67865 | Canola | cytosol | 47.53 | 15.59 |
| CDX72756 | Canola | cytosol | 38.89 | 15.07 |
| CDY23772 | Canola | cytosol | 23.46 | 14.29 |
| CDY40874 | Canola | mitochondrion | 30.86 | 13.33 |
| CDY57669 | Canola | cytosol | 31.48 | 12.91 |
| CDX84915 | Canola | cytosol | 25.31 | 12.2 |
| CDY56208 | Canola | nucleus | 29.63 | 12.12 |
| CDY68693 | Canola | cytosol | 30.86 | 10.39 |
| CDY70726 | Canola | cytosol | 7.41 | 5.41 |
| CDY32393 | Canola | mitochondrion | 5.56 | 3.85 |
| CDY65844 | Canola | extracellular | 6.17 | 3.75 |
| CDY45456 | Canola | cytosol | 4.94 | 3.4 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 3.09 | 2.58 |
| CDY70219 | Canola | cytosol | 2.47 | 2.25 |
| CDY37490 | Canola | mitochondrion | 1.85 | 1.79 |
| CDY01863 | Canola | cytosol | 1.23 | 0.8 |
Protein Annotations
| EnsemblPlants:CDX78893 | EnsemblPlantsGene:GSBRNA2T00131372001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-assoc_interact_dom |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 | PFAM:PF00646 | ProteinID:CDX78893 |
| ProteinID:CDX78893.1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EE7CB6 | MapMan:35.1 |
Description
BnaA01g09600D
Coordinates
chrLK031816:-:651499..652180
Molecular Weight (calculated)
18822.1 Da
IEP (calculated)
8.288
GRAVY (calculated)
-0.165
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMCDLPHDL IREKILTNVP ITSLRAVRCT CKLWNALSKE FILGNETSRQ HHEFQGFMMI SNKICPFRVD IQGIISNHNN LVDPSTKKLD LLDQVEVSRV
101: IHCDGLLLCV TNNNSKLLVW NPYLAQTRWI RPRICYEKSD MYAIGYDNSK EQLVKREIIM SI
101: IHCDGLLLCV TNNNSKLLVW NPYLAQTRWI RPRICYEKSD MYAIGYDNSK EQLVKREIIM SI
001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV
Arabidopsis Description
F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.