CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017069.1-P	Field mustard	cytosol	98.96	98.96
CDX93257	Canola	cytosol	94.81	93.83
CDY71800	Canola	cytosol	79.74	80.79
CDY33027	Canola	cytosol	79.48	80.1
CDX80282	Canola	cytosol	80.0	79.59
CDX82230	Canola	cytosol	47.53	45.3
CDX82277	Canola	cytosol	46.49	44.97
AT4G17200.1	Thale cress	cytosol	43.9	44.36
CDY69763	Canola	cytosol	29.35	44.31
CDY25355	Canola	cytosol	42.6	44.2
CDY22955	Canola	cytosol	22.6	43.94
CDX78893	Canola	cytosol	18.18	43.21
CDY70218	Canola	plastid	8.57	42.31
CDX99431	Canola	cytosol	21.3	41.0
CDY45455	Canola	cytosol	11.17	40.57
CDY33422	Canola	cytosol	44.42	40.33
CDY37492	Canola	cytosol	22.34	39.63
CDY17608	Canola	cytosol	41.3	39.16
CDY03068	Canola	nucleus	41.3	39.07
CDY43730	Canola	cytosol	25.71	38.98
CDY43729	Canola	cytosol	38.44	38.54
CDY37477	Canola	nucleus	18.7	38.5
CDY43731	Canola	cytosol	17.4	38.29
CDY43733	Canola	cytosol	31.43	37.23
CDY03069	Canola	plastid	43.12	37.22
CDY19516	Canola	cytosol	34.03	37.22
CDY67602	Canola	cytosol	34.81	37.02
CDY71567	Canola	cytosol	38.44	36.82
CDY17609	Canola	plastid	41.56	36.12
CDY62603	Canola	cytosol	35.58	36.05
CDX84915	Canola	cytosol	30.91	35.42
CDY32394	Canola	cytosol	34.81	35.08
CDY37491	Canola	cytosol	8.83	35.05
CDY23772	Canola	cytosol	24.16	34.96
CDX78894	Canola	cytosol	33.25	34.41
CDY67601	Canola	cytosol	34.03	34.29
CDY70219	Canola	cytosol	15.84	34.27
CDY32393	Canola	mitochondrion	20.78	34.19
CDX94566	Canola	cytosol	19.22	34.1
CDY69271	Canola	cytosol	32.21	34.07
CDY40874	Canola	mitochondrion	32.47	33.33
CDX82226	Canola	cytosol	22.6	33.08
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	30.39	32.77
CDY01863	Canola	cytosol	21.04	32.53
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	16.36	32.47
CDY45456	Canola	cytosol	19.48	31.91
CDY65844	Canola	extracellular	22.08	31.84
CDY37490	Canola	mitochondrion	13.77	31.55
CDY67865	Canola	cytosol	39.48	30.77
CDY56208	Canola	nucleus	30.91	30.05
CDX72756	Canola	cytosol	31.95	29.43
CDY70726	Canola	cytosol	15.58	27.03
CDY57669	Canola	cytosol	27.01	26.33
CDY68693	Canola	cytosol	29.61	23.7

Protein Annotations

EnsemblPlants:CDY07015	EnsemblPlantsGene:GSBRNA2T00123329001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY07015	ProteinID:CDY07015.1	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEFBCD
MapMan:35.1	:	:	:	:	:

Description

BnaA04g23000D

Coordinates

chrLK031974:-:674198..675355

Molecular Weight (calculated)

43979.0 Da

IEP (calculated)

6.669

GRAVY (calculated)

-0.186

Length

385 amino acids

Sequence
(BLAST)

001: MTTISDLSRD LIGEILSKVP ITCVGKVRCT CKRWNASTRD RLVGKAGAKQ SMGFMMMDYK VCSARINLNG ILKDEEGSVV GPISIKPIDK LNEIEISKVF
101: HCDGLLLCAT RLLVWNPYLG QTKWIQPKKA YHRLDRYALG YDKNKKSYKI LRFVDDQYLP TYLFEFEIYD MNSNLWRALD VTPDWDIEYF RPGLTVKGNT
201: YFFAKQKVIF EEGANEADGD VDDFLVSFDF TKERFGPHLH VPFHSHLHED TVALSSVGEN KLAALYQSED INAMEIWVTT KIEPHMVAWS KLYFLAVNNM
301: IPLIGASFFI DEEKKLAVVF ALDIHGRYKR ACITGENGYF KQVDLGEVAV NSDDEDPYCF PVCSYVPSLV HINQGLVLSG KRKER

Best Arabidopsis Sequence Match ( AT1G25150.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.