CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001764.1-P	Field mustard	cytosol	98.74	98.74
CDY69763	Canola	cytosol	62.06	96.86
CDX82230	Canola	cytosol	77.39	76.24
CDY22955	Canola	cytosol	37.44	75.25
CDY33422	Canola	cytosol	68.09	63.92
AT3G20030.1	Thale cress	cytosol	58.29	57.71
CDY25355	Canola	cytosol	51.76	55.53
AT5G60560.2	Thale cress	cytosol	54.27	53.07
CDY37492	Canola	cytosol	27.64	50.69
CDY70218	Canola	plastid	9.8	50.0
CDY37477	Canola	nucleus	22.11	47.06
CDX78893	Canola	cytosol	19.1	46.91
CDY33027	Canola	cytosol	44.97	46.86
CDY07015	Canola	cytosol	44.97	46.49
CDY37491	Canola	cytosol	11.31	46.39
CDY71800	Canola	cytosol	44.22	46.32
CDY23772	Canola	cytosol	30.65	45.86
CDX80282	Canola	cytosol	44.47	45.74
CDX93257	Canola	cytosol	43.72	44.73
CDY43729	Canola	cytosol	42.21	43.75
CDY43731	Canola	cytosol	19.1	43.43
CDY45455	Canola	cytosol	11.56	43.4
CDY67601	Canola	cytosol	40.7	42.41
CDY43733	Canola	cytosol	34.42	42.15
CDY32394	Canola	cytosol	40.45	42.15
CDY69271	Canola	cytosol	38.44	42.03
CDY67602	Canola	cytosol	37.94	41.71
CDY17608	Canola	cytosol	42.21	41.38
CDY03068	Canola	nucleus	42.21	41.28
CDY19516	Canola	cytosol	36.43	41.19
CDX99431	Canola	cytosol	20.6	41.0
CDY43730	Canola	cytosol	26.13	40.94
CDY32393	Canola	mitochondrion	23.62	40.17
CDX84915	Canola	cytosol	33.42	39.58
CDY62603	Canola	cytosol	37.19	38.95
CDY45456	Canola	cytosol	22.86	38.72
CDX94566	Canola	cytosol	21.11	38.71
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	34.67	38.66
CDY03069	Canola	plastid	43.22	38.56
CDX82226	Canola	cytosol	25.38	38.4
CDY40874	Canola	mitochondrion	35.93	38.13
CDY71567	Canola	cytosol	38.44	38.06
CDY17609	Canola	plastid	41.21	37.02
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.84	36.6
CDX78894	Canola	cytosol	34.17	36.56
CDY56208	Canola	nucleus	35.93	36.11
CDY65844	Canola	extracellular	24.12	35.96
CDY70219	Canola	cytosol	15.83	35.39
CDY01863	Canola	cytosol	21.86	34.94
CDY67865	Canola	cytosol	42.96	34.62
CDX72756	Canola	cytosol	34.92	33.25
CDY37490	Canola	mitochondrion	13.07	30.95
CDY57669	Canola	cytosol	29.15	29.37
CDY70726	Canola	cytosol	16.33	29.28
CDY68693	Canola	cytosol	32.66	27.03

Protein Annotations

EnsemblPlants:CDX82277	EnsemblPlantsGene:GSBRNA2T00137382001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFAM:PF07734	ProteinID:CDX82277	ProteinID:CDX82277.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDE006	MapMan:35.1	:	:

Description

BnaA03g35440D

Coordinates

chrLK031828:-:367099..368295

Molecular Weight (calculated)

45570.5 Da

IEP (calculated)

6.018

GRAVY (calculated)

-0.157

Length

398 amino acids

Sequence
(BLAST)

001: MTIISDLSWD LVEKILSRVP IISLGAVRST CKRWNRLSKN RLLCKAEARR HQFLRFMVKN YKLCSVRFDL HGILDGEEFV DPSIKEITVV DSFNQVKVTQ
101: VFHCDGLSLC VTKDKEENKT SLVVWNPYLG QTRWIQARND YNRLDLYALG YDNNRKHKIL RFLDTGSSYK VTLYEIYDIS SDSWRVLDIT QEWDIMLYHR
201: GVSLKGNTYF FAKKKILLVD GPVEIAEPHA ILLSFDFTKE RFGPPLSLPV EHYVGDTGAL SSLRDEKLAV LYQPTSMSDV QIWVTTKIEP SAVSWVPFLK
301: IDVEPFTGFG FQFHHDGASF FIDEEKKVVV VFQIDESEMT CYDTAYLIGE NGYFEKVGLG EAEKPQWSAN NVGEYCPLVC SCSFVPSLVH INNESAGS

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.