CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07015	Canola	cytosol	93.83	94.81
CDY71800	Canola	cytosol	77.64	79.47
CDY33027	Canola	cytosol	76.86	78.27
CDX80282	Canola	cytosol	77.38	77.78
AT4G17200.1	Thale cress	cytosol	43.7	44.62
CDX82230	Canola	cytosol	45.5	43.81
CDX82277	Canola	cytosol	44.73	43.72
CDY22955	Canola	cytosol	21.59	42.42
CDY69763	Canola	cytosol	27.76	42.35
CDY25355	Canola	cytosol	40.36	42.32
CDX78893	Canola	cytosol	17.48	41.98
CDX99431	Canola	cytosol	21.08	41.0
CDY33422	Canola	cytosol	43.7	40.09
CDY70218	Canola	plastid	7.97	39.74
CDY43730	Canola	cytosol	25.71	39.37
CDY17608	Canola	cytosol	40.62	38.92
CDY03068	Canola	nucleus	40.62	38.82
CDY37492	Canola	cytosol	21.59	38.71
CDY45455	Canola	cytosol	10.54	38.68
CDY37477	Canola	nucleus	18.51	38.5
CDY43729	Canola	cytosol	37.79	38.28
CDY43731	Canola	cytosol	16.97	37.71
CDY03069	Canola	plastid	42.42	37.0
CDY19516	Canola	cytosol	33.16	36.65
CDY67602	Canola	cytosol	33.93	36.46
CDY17609	Canola	plastid	41.13	36.12
CDY71567	Canola	cytosol	37.28	36.07
CDY43733	Canola	cytosol	29.82	35.69
CDY62603	Canola	cytosol	34.7	35.53
CDY32394	Canola	cytosol	34.7	35.34
CDY23772	Canola	cytosol	23.91	34.96
CDY67601	Canola	cytosol	34.19	34.82
CDX84915	Canola	cytosol	29.82	34.52
CDX78894	Canola	cytosol	32.9	34.41
CDX94566	Canola	cytosol	19.02	34.1
CDY37491	Canola	cytosol	8.48	34.02
CDY69271	Canola	cytosol	31.62	33.79
CDY32393	Canola	mitochondrion	20.31	33.76
CDY70219	Canola	cytosol	15.42	33.71
CDX82226	Canola	cytosol	22.11	32.7
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	29.82	32.49
CDY40874	Canola	mitochondrion	31.11	32.27
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	15.94	31.96
CDY01863	Canola	cytosol	20.31	31.73
CDY45456	Canola	cytosol	18.77	31.06
CDY37490	Canola	mitochondrion	13.37	30.95
CDY67865	Canola	cytosol	38.56	30.36
CDY65844	Canola	extracellular	20.82	30.34
CDY56208	Canola	nucleus	30.08	29.55
CDX72756	Canola	cytosol	30.85	28.71
CDY70726	Canola	cytosol	14.91	26.13
CDY57669	Canola	cytosol	25.71	25.32
CDY68693	Canola	cytosol	29.56	23.91

Protein Annotations

EnsemblPlants:CDX93257	EnsemblPlantsGene:GSBRNA2T00155215001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDX93257	ProteinID:CDX93257.1	SEG:seg	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EE1E08	MapMan:35.1	:	:	:	:

Description

BnaC04g46390D

Coordinates

chrLK031875:+:616052..617221

Molecular Weight (calculated)

44312.3 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.199

Length

389 amino acids

Sequence
(BLAST)

001: MTTISHLSRD LIGEILSKVP ITCVGKLRCT CKRWNASTRD RLVGKAGAKQ SMGFMMMDYK VCSARINLNG ILKDEEGSVV GPISIKPIDN LNEIEISKVF
101: HCDGLLLCAT KDRTRLLVWN PYLGQTKWIK PKKAYHRLDS YALGYDKNKK SYKILRFVDD QHLPTYLFEF EIYDMNSNLW RALDVTPDWD IEYFRPGLTV
201: KGNTYFFAKQ KVIFEEDADE ADGDVDDFLV SFDFTKERFG PHLHVPFHSH LPEDTVALSS VGENNLAALY QSEDINAMEI WVTTKIEPHT VSWSKLYFLA
301: VNTMIPLIGA SFFIDKEKKL AVVFAVDIHG RHKRACIIGE GGYFKQVDLA EVAVNSDDED PYCFPVCSYV PSLVHINQGL VLSGKRKER

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.