CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17608	Canola	cytosol	91.4	91.63
CDY03069	Canola	plastid	81.82	74.66
CDY17609	Canola	plastid	80.59	74.04
CDX78893	Canola	cytosol	18.43	46.3
CDY25355	Canola	cytosol	41.77	45.82
CDY43730	Canola	cytosol	28.26	45.28
CDX99431	Canola	cytosol	21.87	44.5
CDY43729	Canola	cytosol	40.79	43.23
CDY33027	Canola	cytosol	40.54	43.19
CDY71800	Canola	cytosol	40.05	42.89
CDX80282	Canola	cytosol	40.79	42.89
CDY43731	Canola	cytosol	18.43	42.86
CDX82230	Canola	cytosol	42.51	42.82
CDY37477	Canola	nucleus	19.41	42.25
CDX82277	Canola	cytosol	41.28	42.21
CDY37492	Canola	cytosol	22.36	41.94
CDY45455	Canola	cytosol	10.81	41.51
CDY67601	Canola	cytosol	38.82	41.36
CDY07015	Canola	cytosol	39.07	41.3
CDY70218	Canola	plastid	7.86	41.03
CDY43733	Canola	cytosol	32.68	40.92
CDY69763	Canola	cytosol	25.55	40.78
CDX93257	Canola	cytosol	38.82	40.62
CDY32394	Canola	cytosol	38.08	40.58
CDY33422	Canola	cytosol	42.26	40.57
CDY22955	Canola	cytosol	19.66	40.4
CDY67602	Canola	cytosol	35.87	40.33
CDX84915	Canola	cytosol	33.17	40.18
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	35.14	40.06
CDY23772	Canola	cytosol	25.8	39.47
CDY62603	Canola	cytosol	36.36	38.95
CDY71567	Canola	cytosol	38.33	38.81
CDY69271	Canola	cytosol	34.64	38.74
CDX78894	Canola	cytosol	35.38	38.71
CDY40874	Canola	mitochondrion	35.38	38.4
CDX94566	Canola	cytosol	20.39	38.25
CDX82226	Canola	cytosol	24.32	37.64
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.94	37.63
CDY19516	Canola	cytosol	32.43	37.5
CDY32393	Canola	mitochondrion	21.38	37.18
CDY37491	Canola	cytosol	8.85	37.11
CDY70219	Canola	cytosol	16.22	37.08
CDY56208	Canola	nucleus	35.87	36.87
CDX72756	Canola	cytosol	37.1	36.12
CDY65844	Canola	extracellular	23.34	35.58
CDY01863	Canola	cytosol	21.38	34.94
CDY45456	Canola	cytosol	19.9	34.47
CDY37490	Canola	mitochondrion	14.0	33.93
CDY67865	Canola	cytosol	41.03	33.81
CDY70726	Canola	cytosol	17.69	32.43
CDY57669	Canola	cytosol	27.76	28.61
CDY68693	Canola	cytosol	30.96	26.2

Protein Annotations

EnsemblPlants:CDY03068	EnsemblPlantsGene:GSBRNA2T00115404001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF28
PFAM:PF00646	PFAM:PF07734	ProteinID:CDY03068	ProteinID:CDY03068.1	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EAD5CE	MapMan:35.1	:	:	:	:

Description

BnaC07g21590D

Coordinates

chrLK031939:+:749197..750420

Molecular Weight (calculated)

47214.6 Da

IEP (calculated)

8.024

GRAVY (calculated)

-0.382

Length

407 amino acids

Sequence
(BLAST)

001: MGKYKDCLKT RANLKKQKKH VAKVDRVTSF NDLPLDLVGD KILSKVPLTS LRAVRSTCKL WNALSKEWMW SNAPTSKRQF LSFMTMDYKV YSLRFHPHKD
101: KYMGVYQPRK HIDILNQVEI SKVFHCNGLL LCVLKDNSGL AVWNPYLGQT RWIEPRSKFH KCDMYALGYD KKRNHKILRC FYDYDFMISK KHSFMVEIYD
201: LRCHSWRVLD VTSDWAIDYD ANGASLKGNT YFFAQEEIPP CGDGSIAVSD LEDFLICFDF TNERFGPRLP LPFHSSLKES VTLSCFGEEQ LAVLHERLDT
301: LETLEFWVTT KIEPNAVSWS RFLKLDITQH EGYLSHVGTF VIDEEEKVAM VFDGDRDDQP SNTRRYHKAL AVGDGYVDFE SLRKCPTESR PPLVCSSSYL
401: PSLVQIN

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.