CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33027	Canola	cytosol	94.21	93.72
Bra033383.1-P	Field mustard	cytosol	93.68	92.23
CDX80282	Canola	cytosol	93.16	91.47
CDY07015	Canola	cytosol	80.79	79.74
CDX93257	Canola	cytosol	79.47	77.64
CDX78893	Canola	cytosol	19.47	45.68
AT4G17200.1	Thale cress	cytosol	45.79	45.67
CDX82230	Canola	cytosol	48.16	45.3
CDY70218	Canola	plastid	9.21	44.87
CDY69763	Canola	cytosol	29.74	44.31
CDX82277	Canola	cytosol	46.32	44.22
CDY22955	Canola	cytosol	22.63	43.43
CDX99431	Canola	cytosol	22.63	43.0
CDY25355	Canola	cytosol	41.58	42.59
CDY37492	Canola	cytosol	24.21	42.4
CDY43730	Canola	cytosol	27.63	41.34
CDY43731	Canola	cytosol	18.95	41.14
CDY33422	Canola	cytosol	45.79	41.04
CDY17608	Canola	cytosol	43.42	40.64
CDY45455	Canola	cytosol	11.32	40.57
CDY43729	Canola	cytosol	40.79	40.36
CDY03068	Canola	nucleus	42.89	40.05
CDY19516	Canola	cytosol	36.05	38.92
CDY37477	Canola	nucleus	18.95	38.5
CDY43733	Canola	cytosol	32.89	38.46
CDY67602	Canola	cytosol	36.58	38.4
CDY37491	Canola	cytosol	9.74	38.14
CDY32393	Canola	mitochondrion	23.42	38.03
CDY32394	Canola	cytosol	38.16	37.96
CDY03069	Canola	plastid	44.47	37.89
CDY71567	Canola	cytosol	39.47	37.31
CDY17609	Canola	plastid	43.42	37.25
CDX78894	Canola	cytosol	36.32	37.1
CDY67601	Canola	cytosol	37.11	36.91
CDY62603	Canola	cytosol	35.79	35.79
CDX82226	Canola	cytosol	24.74	35.74
CDY70219	Canola	cytosol	16.58	35.39
CDX84915	Canola	cytosol	30.79	34.82
CDY69271	Canola	cytosol	33.16	34.62
CDY23772	Canola	cytosol	24.21	34.59
CDX94566	Canola	cytosol	19.21	33.64
CDY01863	Canola	cytosol	21.84	33.33
CDY40874	Canola	mitochondrion	32.89	33.33
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	31.05	33.05
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	16.84	32.99
CDY45456	Canola	cytosol	20.26	32.77
CDY37490	Canola	mitochondrion	13.95	31.55
CDY67865	Canola	cytosol	40.79	31.38
CDY56208	Canola	nucleus	32.63	31.31
CDY65844	Canola	extracellular	21.84	31.09
CDX72756	Canola	cytosol	32.89	29.9
CDY70726	Canola	cytosol	16.58	28.38
CDY57669	Canola	cytosol	28.42	27.34
CDY68693	Canola	cytosol	31.05	24.53

Protein Annotations

EnsemblPlants:CDY71800	EnsemblPlantsGene:GSBRNA2T00020352001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY71800	ProteinID:CDY71800.1	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF375E
UniProt:A0A078JZM4	MapMan:35.1	:	:	:	:

Description

BnaUnng04600DBnaUnng04600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZM4]

Coordinates

chrLK047571:+:510..1673

Molecular Weight (calculated)

44025.5 Da

IEP (calculated)

7.926

GRAVY (calculated)

-0.137

Length

380 amino acids

Sequence
(BLAST)

001: MTTISDLSRD LIGEILSKVP ITCVGKVRCT CKRWNASSRH RIVSKAVARQ FMGFMMMDFK VCLVRIDLNG IVKDEEGSGP VSIKPIDKLT KIEISKVFHC
101: NGLLLCTTRD NTRLLVWNPY LGQMKWIEPK KAYHRLDRYA LGYDTNKKSY KILRFVDDAY WPTPLFEFEI YDMNSNLWRA LDVTPDWDIE FFRPGLTVKG
201: NTYFFAKQKI ILDEDDFLVS FDFTKERFGP HLNVPFHSRL DEDTVVLSSV GEEKLAALYQ CMYRNMMEIW VTTKIEPHAV SWSKLYFLAV DKMVPLLSGS
301: FFIDEEKKLA LAFTLDTLGR YKRAYIIGED EYFKQVDLGE AVVIPDDDGY PYCFPLVCSY VPSLVKINQG LVLSGKRKER

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.