Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70218 | Canola | plastid | 33.96 | 46.15 |
| CDY37491 | Canola | cytosol | 34.91 | 38.14 |
| CDX78893 | Canola | cytosol | 33.02 | 21.6 |
| CDX99431 | Canola | cytosol | 39.62 | 21.0 |
| CDY37492 | Canola | cytosol | 39.62 | 19.35 |
| CDX94566 | Canola | cytosol | 37.74 | 18.43 |
| CDY69763 | Canola | cytosol | 41.51 | 17.25 |
| CDY43731 | Canola | cytosol | 27.36 | 16.57 |
| CDY37477 | Canola | nucleus | 28.3 | 16.04 |
| CDY43730 | Canola | cytosol | 36.79 | 15.35 |
| CDX82226 | Canola | cytosol | 37.74 | 15.21 |
| CDY23772 | Canola | cytosol | 37.74 | 15.04 |
| CDY57669 | Canola | cytosol | 47.17 | 12.66 |
| CDY25355 | Canola | cytosol | 42.45 | 12.13 |
| CDY43733 | Canola | cytosol | 36.79 | 12.0 |
| CDY67602 | Canola | cytosol | 40.57 | 11.88 |
| CDX78894 | Canola | cytosol | 41.51 | 11.83 |
| CDX82277 | Canola | cytosol | 43.4 | 11.56 |
| CDY33027 | Canola | cytosol | 41.51 | 11.52 |
| CDY71567 | Canola | cytosol | 43.4 | 11.44 |
| CDX80282 | Canola | cytosol | 41.51 | 11.37 |
| CDY71800 | Canola | cytosol | 40.57 | 11.32 |
| CDX84915 | Canola | cytosol | 35.85 | 11.31 |
| CDY69271 | Canola | cytosol | 38.68 | 11.26 |
| CDY32394 | Canola | cytosol | 40.57 | 11.26 |
| CDY67601 | Canola | cytosol | 40.57 | 11.26 |
| CDY07015 | Canola | cytosol | 40.57 | 11.17 |
| CDY03068 | Canola | nucleus | 41.51 | 10.81 |
| CDY62603 | Canola | cytosol | 38.68 | 10.79 |
| CDX82230 | Canola | cytosol | 40.57 | 10.64 |
| CDX93257 | Canola | cytosol | 38.68 | 10.54 |
| CDY19516 | Canola | cytosol | 34.91 | 10.51 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 34.91 | 10.36 |
| CDY03069 | Canola | plastid | 43.4 | 10.31 |
| CDY17609 | Canola | plastid | 42.45 | 10.16 |
| CDY43729 | Canola | cytosol | 36.79 | 10.16 |
| CDY33422 | Canola | cytosol | 40.57 | 10.14 |
| CDY67865 | Canola | cytosol | 47.17 | 10.12 |
| CDY17608 | Canola | cytosol | 38.68 | 10.1 |
| CDY40874 | Canola | mitochondrion | 31.13 | 8.8 |
| CDY22955 | Canola | cytosol | 16.04 | 8.59 |
| CDX72756 | Canola | cytosol | 31.13 | 7.89 |
| CDY68693 | Canola | cytosol | 33.02 | 7.28 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 11.32 | 6.19 |
| CDY32393 | Canola | mitochondrion | 12.26 | 5.56 |
| CDY56208 | Canola | nucleus | 18.87 | 5.05 |
| CDY70726 | Canola | cytosol | 10.38 | 4.95 |
| CDY45456 | Canola | cytosol | 6.6 | 2.98 |
| CDY01863 | Canola | cytosol | 6.6 | 2.81 |
| CDY65844 | Canola | extracellular | 6.6 | 2.62 |
| CDY37490 | Canola | mitochondrion | 3.77 | 2.38 |
| CDY70219 | Canola | cytosol | 3.77 | 2.25 |
Protein Annotations
| EnsemblPlants:CDY45455 | EnsemblPlantsGene:GSBRNA2T00082077001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PFAM:PF00646 | ProteinID:CDY45455 | ProteinID:CDY45455.1 |
| SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EE6342 | UniProt:A0A078I3N1 | MapMan:35.1 | : |
Description
BnaA05g12460DBnaA05g12460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3N1]
Coordinates
chrLK032625:+:176472..176847
Molecular Weight (calculated)
12194.9 Da
IEP (calculated)
9.166
GRAVY (calculated)
-0.042
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTISDLSRD LLVEIFSRVP LTSLSAVRST CKTWKALSKG QILGQKSAKK QFMAFMMIEH HYSIYSLRFE LQGIRNENYC YDEDLGKHIS MPTHQTSLGF
101: LFVTLI
101: LFVTLI
001: MTTISDLPYD LVKEIFSWVP FTSLRAVRST CKTWNALSKN QIFGKKSVAR NQFLELMILD SRVCSLRFDL QKIRNEDEED LVDPSMKQIS IPNNDDQVEI
101: SRVYHCDGLL LCIPKDNSSL MLWNPYLGQT KRIRPKNTFH RDDSFALGYN NRNHKILRLN EENESHIDVY DFSSDSWRTV PDDNPYRDEL IYQSGVSLKG
201: NAYFFDREVT TEAEVGTEDL LITGIEDYLR CFDFTTERFG PRLPLPFILP SPSFEYLALS WARDDKLAVL YSHYDTFDII EIWISTKIEP NAVSWSTFLK
301: VDMSLINGLT DDFLIRFEPK SFFIDEEKKV AVLFDTKVTE TCRYQMAYIV GDDGYFKSVN IGVISNSHWI GGELVRSSYV PSLLQLQV
101: SRVYHCDGLL LCIPKDNSSL MLWNPYLGQT KRIRPKNTFH RDDSFALGYN NRNHKILRLN EENESHIDVY DFSSDSWRTV PDDNPYRDEL IYQSGVSLKG
201: NAYFFDREVT TEAEVGTEDL LITGIEDYLR CFDFTTERFG PRLPLPFILP SPSFEYLALS WARDDKLAVL YSHYDTFDII EIWISTKIEP NAVSWSTFLK
301: VDMSLINGLT DDFLIRFEPK SFFIDEEKKV AVLFDTKVTE TCRYQMAYIV GDDGYFKSVN IGVISNSHWI GGELVRSSYV PSLLQLQV
Arabidopsis Description
Putative F-box protein At3g49520 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.