CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	100.0	100.0
CDY37492	Canola	cytosol	27.17	44.7
CDX78893	Canola	cytosol	19.89	43.83
CDY01863	Canola	cytosol	30.25	43.37
CDX99431	Canola	cytosol	24.09	43.0
CDY56208	Canola	nucleus	47.06	42.42
CDX72756	Canola	cytosol	46.78	39.95
CDY37477	Canola	nucleus	20.17	38.5
CDY70218	Canola	plastid	8.4	38.46
CDY37491	Canola	cytosol	10.36	38.14
CDY22955	Canola	cytosol	21.01	37.88
CDY70726	Canola	cytosol	23.53	37.84
CDY43729	Canola	cytosol	38.94	36.2
CDY25355	Canola	cytosol	37.53	36.12
CDY43731	Canola	cytosol	17.65	36.0
CDY17608	Canola	cytosol	40.62	35.71
CDY69763	Canola	cytosol	25.21	35.29
CDY03068	Canola	nucleus	40.06	35.14
CDY43730	Canola	cytosol	24.93	35.04
CDY45455	Canola	cytosol	10.36	34.91
CDX82277	Canola	cytosol	38.66	34.67
CDY40874	Canola	mitochondrion	36.13	34.4
CDX78894	Canola	cytosol	35.57	34.14
CDY67601	Canola	cytosol	36.41	34.03
CDY32394	Canola	cytosol	35.85	33.51
CDY33422	Canola	cytosol	39.78	33.49
CDX94566	Canola	cytosol	20.17	33.18
CDX82230	Canola	cytosol	37.53	33.17
CDY62603	Canola	cytosol	35.01	32.89
CDY67602	Canola	cytosol	33.33	32.87
CDY71567	Canola	cytosol	36.69	32.59
CDY03069	Canola	plastid	40.62	32.51
CDX82226	Canola	cytosol	23.81	32.32
CDY43733	Canola	cytosol	29.41	32.31
CDY17609	Canola	plastid	38.94	31.38
CDY33027	Canola	cytosol	33.33	31.15
CDY71800	Canola	cytosol	33.05	31.05
CDX84915	Canola	cytosol	29.13	30.95
CDY07015	Canola	cytosol	32.77	30.39
CDX80282	Canola	cytosol	32.77	30.23
CDX93257	Canola	cytosol	32.49	29.82
CDY70219	Canola	cytosol	14.85	29.78
CDY19516	Canola	cytosol	28.57	28.98
CDY65844	Canola	extracellular	21.57	28.84
CDY37490	Canola	mitochondrion	13.45	28.57
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	15.41	28.35
CDY32393	Canola	mitochondrion	18.21	27.78
CDY67865	Canola	cytosol	36.69	26.52
CDY23772	Canola	cytosol	19.33	25.94
CDY69271	Canola	cytosol	26.05	25.55
CDY45456	Canola	cytosol	15.13	22.98
CDY68693	Canola	cytosol	28.85	21.41
CDY57669	Canola	cytosol	23.25	21.01

Protein Annotations

EnsemblPlants:CDX87320	EnsemblPlantsGene:GSBRNA2T00146287001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PFAM:PF00646	PFAM:PF07734	ProteinID:CDX87320	ProteinID:CDX87320.1	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0002541E35	MapMan:35.1	:	:	:	:

Description

BnaA07g35530D

Coordinates

chrLK031850:-:146783..151008

Molecular Weight (calculated)

40192.2 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.022

Length

357 amino acids

Sequence
(BLAST)

001: MMPRMIDLPQ KLVVEIFKRV PITSLKAVRS TCKTWEAITK SWVVLGAAAR HEFLLGFVKM NNKVYSLRYH HQGDVSVQQV DLPNQLEISS MVYHCDGLLL
101: CVAKDLSKLL VWNPYLCQSR WIGPRGESFN ASDMYAIGYS EDKNKKRDHK ILRFVDDSCV VGPVISVFRC EIYEMSSSDS SWRVLEEGKP EWEIDVHQRG
201: ASVNDCVTLS SFLRGDDEQL AALFGGCESS FFEIWVTLSV EPKYVSWTKF LVVETGGPIF TSLNFQLSTY FGGSFFVDEE NKVAVVFERD SYISISAPPP
301: SQHTAFVFGQ AGYIHSVNLG QALKLQHLSP YSGKHCQALL PPLVCSSSFR PTLVQVS

Best Arabidopsis Sequence Match ( AT1G24800.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.