CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62603	Canola	cytosol	51.49	45.53
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	26.19	45.36
CDY70218	Canola	plastid	10.12	43.59
AT3G13680.1	Thale cress	cytosol	49.7	42.28
CDY65844	Canola	extracellular	33.04	41.57
CDY43729	Canola	cytosol	47.32	41.41
CDY32393	Canola	mitochondrion	27.98	40.17
CDY37477	Canola	nucleus	22.02	39.57
CDY70219	Canola	cytosol	20.83	39.33
CDY37491	Canola	cytosol	11.01	38.14
CDY43733	Canola	cytosol	36.31	37.54
CDY45456	Canola	cytosol	26.19	37.45
CDY67602	Canola	cytosol	39.88	37.02
CDY43730	Canola	cytosol	27.68	36.61
CDX82226	Canola	cytosol	28.57	36.5
CDY23772	Canola	cytosol	28.87	36.47
CDY37492	Canola	cytosol	23.51	36.41
CDY32394	Canola	cytosol	40.77	35.86
CDY67601	Canola	cytosol	40.77	35.86
CDY45455	Canola	cytosol	11.31	35.85
CDY40874	Canola	mitochondrion	39.88	35.73
CDY37490	Canola	mitochondrion	17.86	35.71
CDY69763	Canola	cytosol	27.08	35.69
CDY25355	Canola	cytosol	38.99	35.31
CDY33422	Canola	cytosol	42.26	33.49
CDX82277	Canola	cytosol	39.58	33.42
CDY03068	Canola	nucleus	40.18	33.17
CDY01863	Canola	cytosol	24.4	32.93
CDX82230	Canola	cytosol	39.58	32.92
CDY17608	Canola	cytosol	39.29	32.51
CDY22955	Canola	cytosol	19.05	32.32
CDY33027	Canola	cytosol	36.31	31.94
CDY69271	Canola	cytosol	33.93	31.32
CDX78894	Canola	cytosol	34.23	30.91
CDY07015	Canola	cytosol	35.42	30.91
CDY71800	Canola	cytosol	34.82	30.79
CDX80282	Canola	cytosol	35.12	30.49
CDY19516	Canola	cytosol	31.55	30.11
CDX93257	Canola	cytosol	34.52	29.82
CDY17609	Canola	plastid	38.99	29.57
CDY03069	Canola	plastid	38.99	29.37
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	30.95	29.13
CDX72756	Canola	cytosol	35.71	28.71
CDY43731	Canola	cytosol	14.88	28.57
CDY56208	Canola	nucleus	33.33	28.28
CDX94566	Canola	cytosol	17.86	27.65
CDY71567	Canola	cytosol	32.74	27.36
CDY67865	Canola	cytosol	39.88	27.13
CDY57669	Canola	cytosol	31.85	27.09
CDY70726	Canola	cytosol	17.86	27.03
CDX78893	Canola	cytosol	12.2	25.31
CDX99431	Canola	cytosol	14.88	25.0
CDY68693	Canola	cytosol	34.52	24.12

Protein Annotations

EnsemblPlants:CDX84915	EnsemblPlantsGene:GSBRNA2T00142253001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	PANTHER:PTHR44355	PFAM:PF07734	ProteinID:CDX84915	ProteinID:CDX84915.1
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE82F3	MapMan:35.1	:	:

Description

BnaC05g21400D

Coordinates

chrLK031839:-:147180..148300

Molecular Weight (calculated)

38480.6 Da

IEP (calculated)

8.899

GRAVY (calculated)

-0.132

Length

336 amino acids

Sequence
(BLAST)

001: MDLREVLLTK EILARVPLNS IKSVRSTCKK WNTLSKRMII GKAAARKQQF ITEGFVIKDQ RVCFMKFNLQ GIRIYQNSVH PCSSNEQTRW IQHRTKFEGF
101: ESLSLGYDKK NRNHKILRFC FVPLPGISNS IVGFEIYDFS SNSWKVLDVT PPEWGIRHCR HNSVSLKGNA YFSAVERRQV PPSRNVGEDF LVCFDFTTKC
201: FGPRLPLPFD TGDCCGILVS LSCVRDEQLA VLFQRWEMHE RIDICITTKI GPNSVSWTKL MVGVPGFMLD LYGGSFFIDE ENKLAVVFDL DMRSRFQTAH
301: IIATDYGYLK SVDIRVSPAD CPLVYSSYAP SLVQLQ

Best Arabidopsis Sequence Match ( AT1G25150.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.