CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69763	Canola	cytosol	41.51	69.02
CDX82277	Canola	cytosol	63.92	68.09
CDX82230	Canola	cytosol	61.32	64.36
CDY22955	Canola	cytosol	29.95	64.14
CDY25355	Canola	cytosol	48.82	55.8
AT3G20030.1	Thale cress	cytosol	52.83	55.72
AT5G60560.2	Thale cress	cytosol	50.47	52.58
CDY37492	Canola	cytosol	25.47	49.77
CDY70218	Canola	plastid	8.96	48.72
CDY33027	Canola	cytosol	41.75	46.34
CDY71800	Canola	cytosol	41.04	45.79
CDX80282	Canola	cytosol	41.75	45.74
CDY37477	Canola	nucleus	20.05	45.45
CDY37491	Canola	cytosol	10.38	45.36
CDX78893	Canola	cytosol	17.22	45.06
CDY07015	Canola	cytosol	40.33	44.42
CDY23772	Canola	cytosol	27.59	43.98
CDY43729	Canola	cytosol	39.62	43.75
CDX93257	Canola	cytosol	40.09	43.7
CDY43731	Canola	cytosol	17.92	43.43
CDY43733	Canola	cytosol	32.78	42.77
CDY67602	Canola	cytosol	36.32	42.54
CDX84915	Canola	cytosol	33.49	42.26
CDY03068	Canola	nucleus	40.57	42.26
CDY43730	Canola	cytosol	25.24	42.13
CDY17608	Canola	cytosol	40.33	42.12
CDX99431	Canola	cytosol	19.58	41.5
CDY67601	Canola	cytosol	37.26	41.36
CDY62603	Canola	cytosol	37.03	41.32
CDY32394	Canola	cytosol	36.79	40.84
CDY19516	Canola	cytosol	33.73	40.62
CDY45455	Canola	cytosol	10.14	40.57
CDY69271	Canola	cytosol	34.43	40.11
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	33.49	39.78
CDY32393	Canola	mitochondrion	21.93	39.74
CDY03069	Canola	plastid	41.51	39.46
CDY71567	Canola	cytosol	37.26	39.3
CDY45456	Canola	cytosol	21.7	39.15
CDX78894	Canola	cytosol	33.49	38.17
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.45	38.14
CDY17609	Canola	plastid	39.62	37.92
CDX82226	Canola	cytosol	23.35	37.64
CDY70219	Canola	cytosol	15.57	37.08
CDY40874	Canola	mitochondrion	32.78	37.07
CDX94566	Canola	cytosol	18.63	36.41
CDY56208	Canola	nucleus	33.96	36.36
CDY65844	Canola	extracellular	22.88	36.33
CDY01863	Canola	cytosol	20.99	35.74
CDY67865	Canola	cytosol	41.51	35.63
CDY37490	Canola	mitochondrion	13.21	33.33
CDX72756	Canola	cytosol	31.6	32.06
CDY57669	Canola	cytosol	29.01	31.14
CDY70726	Canola	cytosol	15.8	30.18
CDY68693	Canola	cytosol	30.9	27.23

Protein Annotations

EnsemblPlants:CDY33422	EnsemblPlantsGene:GSBRNA2T00054326001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY33422	ProteinID:CDY33422.1	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF1C90
UniProt:A0A078H7M6	MapMan:35.1	:	:	:	:

Description

BnaC01g33030DBnaC01g33030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7M6]

Coordinates

chrLK032314:+:57366..58640

Molecular Weight (calculated)

48888.9 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.246

Length

424 amino acids

Sequence
(BLAST)

001: MTTISDLSLD LVEKIVYRVP ITSIGAVRST CKLLNRLCKN RIWLYLEEKR HQFLGFMVKN YKLCLIKFYL HGILDEEEFV DPSIKEIIGD SLLNQVDVTE
101: VFHCDGLLLC VTKDKEEVDR TSLVVWNPYL GQIRWIQRPR NNYDRLDSYA LGYDKKKNRK HKILRFLDDN MGNNVFTYEI YDFSSDSWRV LNITPDYDTT
201: FFQRGVSLKG NAYFFATEKL RVVTEEEYTP EPHKFLICFD FTIESFGPPL PLPFNLYTGD TGTLSSLRDE KLAALYQCCD MAEVEIWVTT KIEEPNALSW
301: IPFLRIDLEP FTGFDLQFQH DGASFFIEEE KKIAVVFHLD SSDQMTYYDS DHEDLIGENG SSEITCNDTA YIIGENGYFQ KVGLGEGVSD PSPLNFGEYC
401: PLVCSSSYVP SLVQISHQFA GDNN

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.