CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57669	Canola	cytosol	69.03	86.33
CDY70218	Canola	plastid	9.92	62.82
CDY37492	Canola	cytosol	27.33	62.21
CDY37477	Canola	nucleus	23.48	62.03
CDY37491	Canola	cytosol	11.13	56.7
CDY70219	Canola	cytosol	19.64	54.49
CDY37490	Canola	mitochondrion	17.41	51.19
CDY43731	Canola	cytosol	17.21	48.57
CDY43730	Canola	cytosol	24.9	48.43
CDX78893	Canola	cytosol	15.59	47.53
CDY45455	Canola	cytosol	10.12	47.17
CDY43729	Canola	cytosol	35.02	45.05
CDY69763	Canola	cytosol	23.08	44.71
CDY67602	Canola	cytosol	32.19	43.92
CDX82230	Canola	cytosol	35.43	43.32
CDX99431	Canola	cytosol	17.41	43.0
CDX82277	Canola	cytosol	34.62	42.96
CDY25355	Canola	cytosol	31.98	42.59
CDY67601	Canola	cytosol	32.79	42.41
CDY32394	Canola	cytosol	32.79	42.41
CDX82226	Canola	cytosol	22.47	42.21
CDY33422	Canola	cytosol	35.63	41.51
CDY33027	Canola	cytosol	31.78	41.1
CDY03068	Canola	nucleus	33.81	41.03
CDX94566	Canola	cytosol	18.02	41.01
CDY17608	Canola	cytosol	33.6	40.89
CDY71800	Canola	cytosol	31.38	40.79
CDY43733	Canola	cytosol	26.72	40.62
CDY23772	Canola	cytosol	21.86	40.6
CDX80282	Canola	cytosol	31.78	40.57
CDY62603	Canola	cytosol	31.17	40.53
CDY32393	Canola	mitochondrion	19.03	40.17
CDX84915	Canola	cytosol	27.13	39.88
CDY07015	Canola	cytosol	30.77	39.48
CDY22955	Canola	cytosol	15.79	39.39
CDY03069	Canola	plastid	35.22	39.01
CDX93257	Canola	cytosol	30.36	38.56
CDY17609	Canola	plastid	34.41	38.37
CDY71567	Canola	cytosol	30.57	37.56
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	14.57	37.11
CDX78894	Canola	cytosol	27.73	36.83
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	26.52	36.69
CDY19516	Canola	cytosol	25.71	36.08
CDY40874	Canola	mitochondrion	26.72	35.2
CDY69271	Canola	cytosol	25.91	35.16
CDY65844	Canola	extracellular	18.62	34.46
CDY56208	Canola	nucleus	27.13	33.84
CDY01863	Canola	cytosol	16.8	33.33
CDX72756	Canola	cytosol	26.32	31.1
CDY45456	Canola	cytosol	14.57	30.64
CDY70726	Canola	cytosol	12.96	28.83
CDY68693	Canola	cytosol	26.11	26.82

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078JN27	EnsemblPlants:CDY67865	ProteinID:CDY67865	ProteinID:CDY67865.1
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067583001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDCE65

Description

BnaC01g44740DBnaC01g44740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN27]

Coordinates

chrLK036593:+:267..2470

Molecular Weight (calculated)

56766.7 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.316

Length

494 amino acids

Sequence
(BLAST)

001: MHDYSPVSLW HNPQSWQKYL THIRGSELES YLTRVVEENL KPQHVDQIKK IVNMLDEREM LVQICAGLGL DRRAKEVFGG ELQWFAIAIG FIEKAETYML
101: DDSRLLKCGE VTTMSDLPDD LAEEILSRVP LTSLSAVRST CRKWNDLSKN QVFGKSASTG RKQFLGFMLK DYKVCSMKFD LQGIGNEVDF VDPSIKEVSI
201: LDQVEITQVF HCGGLLLCVT KDRSRLLVWN PYLGQTRWIQ PRNTFRSEDR YAYDTKGEFG SVDKYLIFGY EIYDLSSNSW KVFNVKLDRK IHYYQRGVSL
301: NGHTFFLAEE RWSKRNNKID EIISFDFTTE RFGEHLPLPI KNLGKFVSLS CVREEQLAVL HQSSVIDHTL EIWVSSNIDL GAVSWSKFLR TTSFCRVDFL
401: AGSFFIDEEK KVAVVVDLDN GGQARTETRY NQRANIIGQD EYFKPVNVGK ALDHGKLNKF GFLISDLCRP LVCSYVPSSV QLQVQPGNWK EGDD

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.