CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013348.1-P	Field mustard	cytosol	98.39	98.39
CDX99431	Canola	cytosol	34.68	64.5
CDX78893	Canola	cytosol	24.46	56.17
CDY71567	Canola	cytosol	54.84	50.75
CDY70218	Canola	plastid	9.41	44.87
CDY37491	Canola	cytosol	11.02	42.27
CDY45455	Canola	cytosol	11.83	41.51
CDY37477	Canola	nucleus	20.7	41.18
CDY37492	Canola	cytosol	23.66	40.55
CDY22955	Canola	cytosol	19.89	37.37
CDY71800	Canola	cytosol	37.1	36.32
CDY69763	Canola	cytosol	24.73	36.08
CDY33027	Canola	cytosol	36.83	35.86
CDY17608	Canola	cytosol	38.98	35.71
CDY32394	Canola	cytosol	36.56	35.6
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	34.14	35.57
CDY03068	Canola	nucleus	38.71	35.38
CDY67602	Canola	cytosol	34.41	35.36
CDY40874	Canola	mitochondrion	35.48	35.2
CDX80282	Canola	cytosol	36.56	35.14
CDY67601	Canola	cytosol	35.75	34.82
CDY25355	Canola	cytosol	34.68	34.77
CDY32393	Canola	mitochondrion	21.77	34.62
CDY43729	Canola	cytosol	35.48	34.38
CDY70219	Canola	cytosol	16.4	34.27
CDX84915	Canola	cytosol	30.91	34.23
CDX82277	Canola	cytosol	36.56	34.17
CDY19516	Canola	cytosol	32.26	34.09
CDY03069	Canola	plastid	40.86	34.08
CDX82230	Canola	cytosol	36.83	33.91
CDY17609	Canola	plastid	40.32	33.86
CDY43730	Canola	cytosol	23.12	33.86
CDX82226	Canola	cytosol	23.92	33.84
CDY33422	Canola	cytosol	38.17	33.49
CDY07015	Canola	cytosol	34.41	33.25
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.2	32.99
CDX93257	Canola	cytosol	34.41	32.9
CDY70726	Canola	cytosol	19.35	32.43
CDY62603	Canola	cytosol	33.06	32.37
CDY23772	Canola	cytosol	23.12	32.33
CDY65844	Canola	extracellular	23.12	32.21
CDY43731	Canola	cytosol	15.05	32.0
CDY37490	Canola	mitochondrion	14.25	31.55
CDY43733	Canola	cytosol	27.42	31.38
CDY69271	Canola	cytosol	30.65	31.32
CDY45456	Canola	cytosol	19.62	31.06
CDY01863	Canola	cytosol	20.16	30.12
CDX94566	Canola	cytosol	16.94	29.03
CDX72756	Canola	cytosol	31.18	27.75
CDY67865	Canola	cytosol	36.83	27.73
CDY56208	Canola	nucleus	29.3	27.53
CDY57669	Canola	cytosol	28.49	26.84
CDY68693	Canola	cytosol	31.45	24.32

Protein Annotations

EnsemblPlants:CDX78894	EnsemblPlantsGene:GSBRNA2T00131373001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646
PFAM:PF07734	ProteinID:CDX78894	ProteinID:CDX78894.1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EF23C8	MapMan:35.1	:	:	:	:

Description

BnaA01g09610D

Coordinates

chrLK031816:-:654165..655601

Molecular Weight (calculated)

42953.9 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.312

Length

372 amino acids

Sequence
(BLAST)

001: MMTTMNDLPH DLIGEKILTK VSITSLIAVR CTCKLWNALS KEFIVGRETS RQHREFLGFM MASNKIYPSS FDIQGIRKHN SSVDPSMKQD NTKLLVWNPY
101: VGQTRWIRPR KCFKKSDLYA IGYDNNNKVR NYKILRLDRY CGIRLEIYDF SSDSWSVLGV ISHCIIYQFR RGVTLKGCNY YLGSVRKTSN APSFKSCLLC
201: FDYTPSRYGQ PLPIPYNNNF HKQAVSLSTA REDNIAALYF DSRLYGTSEI WVTNKIEHNA VSWSKFFKVE MTMMNQLRVL NFGLNADIFF VDEENKVAVV
301: ITNSRSRSCN QPKASIIGED GYFKSIKIGE MNSNLPTELY PLLVFSPYIP SLVQINRPLE KKERKRCLTA LD

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.