Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70219 | Canola | cytosol | 83.93 | 79.21 |
| Bra021512.1-P | Field mustard | plastid | 81.55 | 34.95 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 36.31 | 31.44 |
| CDY45456 | Canola | cytosol | 33.93 | 24.26 |
| CDY32393 | Canola | mitochondrion | 32.14 | 23.08 |
| CDY65844 | Canola | extracellular | 35.12 | 22.1 |
| CDY70726 | Canola | cytosol | 29.17 | 22.07 |
| CDY57669 | Canola | cytosol | 50.6 | 21.52 |
| CDY37492 | Canola | cytosol | 26.79 | 20.74 |
| CDY01863 | Canola | cytosol | 29.76 | 20.08 |
| CDY69763 | Canola | cytosol | 29.76 | 19.61 |
| CDY23772 | Canola | cytosol | 29.76 | 18.8 |
| CDX82226 | Canola | cytosol | 29.17 | 18.63 |
| CDX84915 | Canola | cytosol | 35.71 | 17.86 |
| CDY37477 | Canola | nucleus | 19.64 | 17.65 |
| CDY43733 | Canola | cytosol | 33.93 | 17.54 |
| CDY67865 | Canola | cytosol | 51.19 | 17.41 |
| CDY22955 | Canola | cytosol | 20.24 | 17.17 |
| CDY43729 | Canola | cytosol | 37.5 | 16.41 |
| CDY62603 | Canola | cytosol | 36.9 | 16.32 |
| CDY40874 | Canola | mitochondrion | 34.52 | 15.47 |
| CDY67602 | Canola | cytosol | 31.55 | 14.64 |
| CDX78894 | Canola | cytosol | 31.55 | 14.25 |
| CDY32394 | Canola | cytosol | 32.14 | 14.14 |
| CDY67601 | Canola | cytosol | 32.14 | 14.14 |
| CDY17608 | Canola | cytosol | 33.93 | 14.04 |
| CDY03068 | Canola | nucleus | 33.93 | 14.0 |
| CDX80282 | Canola | cytosol | 32.14 | 13.95 |
| CDY71800 | Canola | cytosol | 31.55 | 13.95 |
| CDY19516 | Canola | cytosol | 29.17 | 13.92 |
| CDY33027 | Canola | cytosol | 31.55 | 13.87 |
| CDY43730 | Canola | cytosol | 20.83 | 13.78 |
| CDY07015 | Canola | cytosol | 31.55 | 13.77 |
| CDY25355 | Canola | cytosol | 30.36 | 13.75 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 28.57 | 13.45 |
| CDY71567 | Canola | cytosol | 32.14 | 13.43 |
| CDY56208 | Canola | nucleus | 31.55 | 13.38 |
| CDX93257 | Canola | cytosol | 30.95 | 13.37 |
| CDY03069 | Canola | plastid | 35.12 | 13.23 |
| CDY33422 | Canola | cytosol | 33.33 | 13.21 |
| CDX82277 | Canola | cytosol | 30.95 | 13.07 |
| CDY17609 | Canola | plastid | 33.33 | 12.64 |
| CDX82230 | Canola | cytosol | 29.76 | 12.38 |
| CDY69271 | Canola | cytosol | 25.0 | 11.54 |
| CDY68693 | Canola | cytosol | 31.55 | 11.02 |
| CDX72756 | Canola | cytosol | 26.79 | 10.77 |
| CDX99431 | Canola | cytosol | 5.36 | 4.5 |
| CDY43731 | Canola | cytosol | 4.17 | 4.0 |
| CDY45455 | Canola | cytosol | 2.38 | 3.77 |
| CDX94566 | Canola | cytosol | 4.76 | 3.69 |
| CDY37491 | Canola | cytosol | 1.79 | 3.09 |
| CDY70218 | Canola | plastid | 1.19 | 2.56 |
| CDX78893 | Canola | cytosol | 1.79 | 1.85 |
Protein Annotations
| EnsemblPlants:CDY37490 | EnsemblPlantsGene:GSBRNA2T00064095001 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | PFAM:PF07734 | ProteinID:CDY37490 |
| ProteinID:CDY37490.1 | SEG:seg | TIGRFAMs:TIGR01640 | UniParc:UPI0004EF00BD | UniProt:A0A078HGN1 | MapMan:35.1 |
Description
BnaC01g37420DBnaC01g37420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGN1]
Coordinates
chrLK032401:-:284925..285623
Molecular Weight (calculated)
19323.4 Da
IEP (calculated)
9.597
GRAVY (calculated)
-0.293
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLGFRKLLP LPFKSHYSNK LLLSCVREEQ LAVLHYNWVM GQALEIWVTK KIDPGEVSWS KFLRFTSSCI GHIIPGSFFV DEEKKVVVVV DQDYNRRIVT
101: GRNQSAHILG PDRYFKSVNI GETRYIGKRS KHGYMISELC RPRVCSSYVP SSVQLQTNQP VKSEESEN
101: GRNQSAHILG PDRYFKSVNI GETRYIGKRS KHGYMISELC RPRVCSSYVP SSVQLQTNQP VKSEESEN
001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN
Arabidopsis Description
F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.