Factsheet for Bra021512.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70219	Canola	cytosol	44.13	97.19
CDY37490	Canola	mitochondrion	34.95	81.55
Bra017242.1-P	Field mustard	cytosol	47.19	47.68
Bra041044.1-P	Field mustard	cytosol	38.52	46.18
Bra001764.1-P	Field mustard	cytosol	46.43	45.73
Bra017247.1-P	Field mustard	mitochondrion	38.52	44.15
Bra020991.1-P	Field mustard	cytosol	44.39	43.39
Bra022464.1-P	Field mustard	cytosol	42.09	43.31
Bra001800.1-P	Field mustard	cytosol	44.39	43.07
Bra001803.1-P	Field mustard	cytosol	40.56	42.63
Bra002578.1-P	Field mustard	cytosol	39.29	41.4
Bra041045.1-P	Field mustard	nucleus	39.54	40.9
Bra024829.1-P	Field mustard	cytosol	42.35	40.89
Bra033383.1-P	Field mustard	cytosol	39.54	40.16
Bra017069.1-P	Field mustard	cytosol	39.03	39.74
Bra029507.1-P	Field mustard	cytosol	39.03	38.64
Bra013348.1-P	Field mustard	cytosol	36.48	38.44
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	34.69	38.1
Bra021825.1-P	Field mustard	cytosol	28.57	37.58
Bra024830.1-P	Field mustard	nucleus, plastid	42.35	37.56
Bra018376.1-P	Field mustard	cytosol	21.94	36.91
Bra017228.1-P	Field mustard	cytosol	23.98	36.86
Bra021823.1-P	Field mustard	cytosol	32.4	34.89
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	33.42	33.25

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra021512	EnsemblPlants:Bra021512.1	EnsemblPlants:Bra021512.1-P	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	UniProt:M4DYB6	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0002544566	SEG:seg	:	:	:	:

Description

AT3G13680 (E=1e-110) | F-box family protein

Coordinates

chrA01:-:24859594..24860772

Molecular Weight (calculated)

44935.3 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.229

Length

392 amino acids

Sequence
(BLAST)

001: MTTMSDLPLD LTKEIFSRVP LTSLSSVRST CKSWNSISKS QVLCESAAGR KQFLGFMMKD FSVCSMKFDL QGIQNEADFV NPSIKQVSVL DQVKISQIFQ
101: CEGLLLCVTR DKSRLLVWNP YLGQTRWIQP RNTFLSGDQY ALGYDKNRKH KILRILGDYK SGYMVLGYEI FDLSANTWKV SNDNQDWRID HYQRGVSLKG
201: HTYFLAKEKI RIGGTNNNID CILSFDFTTE RFRKLLPLPF KSYYSDKLVL SCVREEQLAV LHYSWVMGQA LEIWVTKKID PGEVSWSKFL RLTSWCMGDI
301: LPGSFFIDEE KKVVVVVYEI RILTGRNQSA HILGPDGYFK SVNIGETRYI GRRIKHGYMI SELCGPLVCS SYVPSSVQLQ TNQPVKSEEG EN

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.