Factsheet for Bra041045.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43731	Canola	cytosol	40.9	88.57
Bra017247.1-P	Field mustard	mitochondrion	58.31	64.62
Bra041044.1-P	Field mustard	cytosol	54.09	62.69
Bra017242.1-P	Field mustard	cytosol	60.95	59.54
Bra017228.1-P	Field mustard	cytosol	35.88	53.33
AT3G13680.1	Thale cress	cytosol	48.55	46.58
Bra021512.1-P	Field mustard	plastid	40.9	39.54
Bra001803.1-P	Field mustard	cytosol	37.2	37.8
Bra022464.1-P	Field mustard	cytosol	37.47	37.27
Bra001764.1-P	Field mustard	cytosol	39.05	37.19
Bra024829.1-P	Field mustard	cytosol	39.58	36.95
Bra002578.1-P	Field mustard	cytosol	35.62	36.29
Bra020991.1-P	Field mustard	cytosol	36.94	34.91
Bra018376.1-P	Field mustard	cytosol	21.37	34.76
Bra033383.1-P	Field mustard	cytosol	35.36	34.72
Bra001800.1-P	Field mustard	cytosol	36.94	34.65
Bra024830.1-P	Field mustard	nucleus, plastid	40.37	34.62
Bra029507.1-P	Field mustard	cytosol	35.88	34.34
Bra013348.1-P	Field mustard	cytosol	33.51	34.14
Bra017069.1-P	Field mustard	cytosol	34.56	34.03
Bra021825.1-P	Field mustard	cytosol	26.65	33.89
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	31.4	33.33
Bra021823.1-P	Field mustard	cytosol	30.61	31.87
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	32.45	31.22

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra041045	EnsemblPlants:Bra041045.1	EnsemblPlants:Bra041045.1-P	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	UniProt:M4FIW6	PFAM:PF00646	PFAM:PF07734	PANTHER:PTHR31790
SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253EC2B	SEG:seg

Description

AT3G13680 (E=7e-083) | F-box family protein

Coordinates

chrScaffold000412:-:5392..6531

Molecular Weight (calculated)

44148.2 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.328

Length

379 amino acids

Sequence
(BLAST)

001: MKTIFDCWFK KTKKKKKKKT ILDLPEDLVE DEIISRLPIS SLRSVRSTCK KWNTLCKNRI LFGKAAKKQF LMMDSRRICL MNFDLSKDNG DPSIKQVSVL
101: DQKFQIPMVF QSDGLLLCVL KDYSRLVVWN PYLGQMRWIE PRHSFHSSDR FALGHDSNFN YKILRISSEI HPVTERKVLG FELYDFTSSS WKVLDDVTPK
201: RQIRSCQQCE SLKGNAYFLT SVRGSFRCFD FTTERFGPPL PLPPFHSYDG FHCTSFSCVR EEQQLAVLYQ RWEWESSDTI EISVTDKIGP DDVSWTKFLK
301: VNTGYWVYPT ARSFLVDEEK KLAVVFVLDK LSSGCLYPTA HVFGQDGYFK YVRIGEAPYC NSTNQANGKI VVIFFRINR

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.