Factsheet for Bra024829.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17608	Canola	cytosol	95.07	95.07
Bra024830.1-P	Field mustard	nucleus, plastid	79.06	72.62
Bra020991.1-P	Field mustard	cytosol	48.03	48.63
Bra022464.1-P	Field mustard	cytosol	43.6	46.46
Bra017242.1-P	Field mustard	cytosol	42.36	44.33
Bra002578.1-P	Field mustard	cytosol	40.39	44.09
Bra033383.1-P	Field mustard	cytosol	41.38	43.52
Bra001800.1-P	Field mustard	cytosol	42.61	42.82
Bra041044.1-P	Field mustard	cytosol	34.24	42.51
Bra001764.1-P	Field mustard	cytosol	41.63	42.46
Bra021512.1-P	Field mustard	plastid	40.89	42.35
Bra017069.1-P	Field mustard	cytosol	40.15	42.34
Bra001803.1-P	Field mustard	cytosol	38.67	42.09
Bra017247.1-P	Field mustard	mitochondrion	34.98	41.52
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	36.45	41.46
Bra041045.1-P	Field mustard	nucleus	36.95	39.58
Bra013348.1-P	Field mustard	cytosol	35.96	39.25
Bra021825.1-P	Field mustard	cytosol	27.83	37.92
Bra021823.1-P	Field mustard	cytosol	33.74	37.64
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	36.21	37.31
Bra017228.1-P	Field mustard	cytosol	23.4	37.25
Bra029507.1-P	Field mustard	cytosol	35.96	36.87
Bra018376.1-P	Field mustard	cytosol	20.69	36.05

Protein Annotations

EnsemblPlants:Bra024829.1	EnsemblPlants:Bra024829.1-P	EnsemblPlantsGene:Bra024829	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	PANTHER:PTHR31790	PFAM:PF07734	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000253F8D8	UniProt:M4E7S3	MapMan:35.1	:	:

Description

AT3G13680 (E=1e-092) | F-box family protein

Coordinates

chrA06:+:23661746..23662966

Molecular Weight (calculated)

46920.0 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.387

Length

406 amino acids

Sequence
(BLAST)

001: MGKYKDCLKT RANLKKQKKH VAKVERVTRF TDLPLDLVGD KILSKVPITS LRAVRSTCKL WNALSREWIL SNTPTSKRQF SSFMTMDYKV YSLRFHPHKD
101: KYMGVYQSRK HIDILNQVEI SKVFHCNGLL LCVLKDNSGL AVWNPYLGQT RWIEPRSKFH KCDMYALGYD KKRNHKILRC FDDYDIDSRK HSFIVEIYDL
201: GSHSWRVLDV TSDWAIDFDA NGASLKGNTY FFAQEEIPPC GDGSIAVSDL EDFLICFDFT NERFGPRLPL PFHSSLKEGV TLSCFGEDQL AVLHERFYTL
301: ETLEFWVTTK IEPNVVSWSK FLKLDITQHD GYLSHVGSFV IDEEEKVAMV FDGDRDDQPS NTRRYHKALA VGDGYVDFES LRKCPTESRP PLVCSSSYLP
401: NLVQIN

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.