CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024829.1-P	Field mustard	cytosol	95.07	95.07
CDY03068	Canola	nucleus	91.63	91.4
CDY03069	Canola	plastid	80.3	73.09
CDY17609	Canola	plastid	79.31	72.69
CDX78893	Canola	cytosol	18.97	47.53
CDY25355	Canola	cytosol	42.36	46.36
CDY43730	Canola	cytosol	28.57	45.67
CDX99431	Canola	cytosol	22.17	45.0
CDY43729	Canola	cytosol	41.63	44.01
CDY33027	Canola	cytosol	40.89	43.46
CDY71800	Canola	cytosol	40.64	43.42
CDX80282	Canola	cytosol	41.13	43.15
CDX82230	Canola	cytosol	42.86	43.07
CDY43731	Canola	cytosol	18.47	42.86
CDY37492	Canola	cytosol	22.91	42.86
CDX82277	Canola	cytosol	41.38	42.21
CDY43733	Canola	cytosol	33.74	42.15
CDY07015	Canola	cytosol	39.16	41.3
CDY67601	Canola	cytosol	38.67	41.1
CDY70218	Canola	plastid	7.88	41.03
CDY22955	Canola	cytosol	19.95	40.91
CDY37477	Canola	nucleus	18.72	40.64
CDX93257	Canola	cytosol	38.92	40.62
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	35.71	40.62
CDY69763	Canola	cytosol	25.37	40.39
CDY67602	Canola	cytosol	35.96	40.33
CDY33422	Canola	cytosol	42.12	40.33
CDY32394	Canola	cytosol	37.93	40.31
CDY71567	Canola	cytosol	39.66	40.05
CDY62603	Canola	cytosol	37.19	39.74
CDX84915	Canola	cytosol	32.51	39.29
CDY40874	Canola	mitochondrion	36.21	39.2
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	18.72	39.18
CDX78894	Canola	cytosol	35.71	38.98
CDY23772	Canola	cytosol	25.37	38.72
CDY45455	Canola	cytosol	10.1	38.68
CDY69271	Canola	cytosol	33.99	37.91
CDY56208	Canola	nucleus	36.21	37.12
CDY37491	Canola	cytosol	8.87	37.11
CDY70219	Canola	cytosol	16.26	37.08
CDX94566	Canola	cytosol	19.7	36.87
CDY65844	Canola	extracellular	24.14	36.7
CDY45456	Canola	cytosol	21.18	36.6
CDX82226	Canola	cytosol	23.65	36.5
CDY32393	Canola	mitochondrion	20.94	36.32
CDY19516	Canola	cytosol	31.28	36.08
CDX72756	Canola	cytosol	36.95	35.89
CDY01863	Canola	cytosol	21.92	35.74
CDY37490	Canola	mitochondrion	14.04	33.93
CDY67865	Canola	cytosol	40.89	33.6
CDY70726	Canola	cytosol	17.49	31.98
CDY57669	Canola	cytosol	27.59	28.35
CDY68693	Canola	cytosol	30.54	25.78

Protein Annotations

EnsemblPlants:CDY17608	EnsemblPlantsGene:GSBRNA2T00001815001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	ProteinID:CDY17608	ProteinID:CDY17608.1	SUPFAM:SSF50965	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EE8D51	UniProt:A0A078FZ67	MapMan:35.1	:	:

Description

BnaA06g34270DBnaA06g34270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ67]

Coordinates

chrLK032076:+:79810..81030

Molecular Weight (calculated)

47003.1 Da

IEP (calculated)

7.548

GRAVY (calculated)

-0.373

Length

406 amino acids

Sequence
(BLAST)

001: MGKYKDCLKT RANLKKQKKH VAKVEIVTRF TDLPLDLVGD KILSKVPITS LRAVRSTCKL WNDLSREWIL SNTPTSTRQF SSFMTMDYKV YSLRFHPHKD
101: KYMGVYQSRK HIDILDQVEI SKVFHCHGLL LCVLKDNSGL AVWNPYLGQT RWIEPRSKFH KCDMYALGYD KKRNHKILRC FDDYDIDSRK HSFIVEIYDL
201: RSHSWRVLDV TSDWAIDFDA NGASLKGNTY FFAQEEIPPC GDGSIAVSDL EDFLICFDFT NERFGPRLPL PFHSSLKEGV TLSCFGEDQL AVLHERFYTL
301: ETLQFWVTTK IEPNVVSWSK FLKLDITQHE GYLSHVGSFV IDEEEKVAMV FDGDRDDQPS NTRRYHKALA VGDGYVDFES LRKCPTESRP PLVCSSSYLP
401: SLVQIN

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.