CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01863	Canola	cytosol	42.34	71.08
CDY56208	Canola	nucleus	54.78	57.83
CDY70726	Canola	cytosol	27.03	50.9
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	39.95	46.78
CDX78893	Canola	cytosol	15.07	38.89
CDY43730	Canola	cytosol	22.97	37.8
CDY43729	Canola	cytosol	34.69	37.76
CDY32393	Canola	mitochondrion	21.05	37.61
CDY25355	Canola	cytosol	33.25	37.47
CDY03068	Canola	nucleus	36.12	37.1
CDY17608	Canola	cytosol	35.89	36.95
CDY37477	Canola	nucleus	16.51	36.9
CDY67601	Canola	cytosol	33.01	36.13
CDX84915	Canola	cytosol	28.71	35.71
CDY32394	Canola	cytosol	32.54	35.6
CDY67602	Canola	cytosol	30.62	35.36
CDX82226	Canola	cytosol	22.01	34.98
CDX82277	Canola	cytosol	33.25	34.92
CDX82230	Canola	cytosol	33.25	34.41
CDY17609	Canola	plastid	36.36	34.31
CDY33027	Canola	cytosol	31.34	34.29
CDY03069	Canola	plastid	36.12	33.86
CDY43731	Canola	cytosol	14.11	33.71
CDY37492	Canola	cytosol	17.46	33.64
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	15.55	33.51
CDY69763	Canola	cytosol	20.33	33.33
CDY40874	Canola	mitochondrion	29.67	33.07
CDX99431	Canola	cytosol	15.79	33.0
CDY62603	Canola	cytosol	29.9	32.89
CDY71800	Canola	cytosol	29.9	32.89
CDX80282	Canola	cytosol	30.38	32.82
CDY71567	Canola	cytosol	30.86	32.09
CDY43733	Canola	cytosol	24.88	32.0
CDY07015	Canola	cytosol	29.43	31.95
CDY69271	Canola	cytosol	27.75	31.87
CDY33422	Canola	cytosol	32.06	31.6
CDY19516	Canola	cytosol	26.32	31.25
CDY23772	Canola	cytosol	19.86	31.2
CDX78894	Canola	cytosol	27.75	31.18
CDY45455	Canola	cytosol	7.89	31.13
CDY65844	Canola	extracellular	19.86	31.09
CDX93257	Canola	cytosol	28.71	30.85
CDY22955	Canola	cytosol	14.59	30.81
CDY37491	Canola	cytosol	6.94	29.9
CDX94566	Canola	cytosol	15.31	29.49
CDY70219	Canola	cytosol	12.2	28.65
CDY70218	Canola	plastid	5.26	28.21
CDY45456	Canola	cytosol	15.31	27.23
CDY37490	Canola	mitochondrion	10.77	26.79
CDY67865	Canola	cytosol	31.1	26.32
CDY57669	Canola	cytosol	21.29	22.53
CDY68693	Canola	cytosol	25.12	21.83

Protein Annotations

EnsemblPlants:CDX72756	EnsemblPlantsGene:GSBRNA2T00103132001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:Gal_Oxase/kelch_b-propeller	PANTHER:PTHR44355	PFAM:PF07734	ProteinID:CDX72756
ProteinID:CDX72756.1	SEG:seg	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEADEA
MapMan:35.1	:	:	:	:	:

Description

BnaC06g32040D

Coordinates

chrLK031797:-:42897..44244

Molecular Weight (calculated)

47938.3 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.244

Length

418 amino acids

Sequence
(BLAST)

001: MMMSDLPQEL VGEKILTRVP ITSLKAVRST CKTWDAITKS WVVLGKAAAG PQQQFLTMNG KVDLLNELEV SKLYHCDGLV LCVGKDNSEL VLWNPYLCQT
101: RWIGPRESFH ITDRHAIAQP QNPEVGFEIY EIRSNSWRVL DEVNPEGSID THQRGVSVKG NTYFFAHRDI ENHGRYGFGS REEVFLLCFD FTKERFGPRL
201: PLPFDSFDGF NDDLVTLSSF LRGDDEQLAV LFGGYESGFF EIWVTLTVEP NRASWSRFLR MEPGPFSSYG FKLYSSLSSG GSFFVDEENK FAVLFELFGL
301: KQNQDCSQGF CVWTRRLLQN LRQPGEALIL EHQHRKAARP PLVCSYRPSL VQVKHPLETH VSSSQKETHV SLPAQRSSVS FYYKIQFENF RYTQLVPILT
401: ETECLIFTIL QVKLRKLV

Best Arabidopsis Sequence Match ( AT1G24800.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.