CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84915	Canola	cytosol	45.53	51.49
CDY37477	Canola	nucleus	23.95	48.66
CDY43730	Canola	cytosol	32.37	48.43
CDY43729	Canola	cytosol	46.84	46.35
CDY43731	Canola	cytosol	21.05	45.71
AT3G13680.1	Thale cress	cytosol	46.84	45.06
CDY37492	Canola	cytosol	25.26	44.24
CDY43733	Canola	cytosol	37.63	44.0
CDY70218	Canola	plastid	8.95	43.59
CDY67602	Canola	cytosol	39.21	41.16
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	20.53	40.21
CDY65844	Canola	extracellular	28.16	40.07
CDY37491	Canola	cytosol	10.0	39.18
CDY70219	Canola	cytosol	18.16	38.76
CDY45455	Canola	cytosol	10.79	38.68
CDY32393	Canola	mitochondrion	23.68	38.46
CDY25355	Canola	cytosol	37.37	38.27
CDX78893	Canola	cytosol	16.32	38.27
CDY67601	Canola	cytosol	38.16	37.96
CDY69763	Canola	cytosol	25.0	37.25
CDY17608	Canola	cytosol	39.74	37.19
CDX82277	Canola	cytosol	38.95	37.19
CDY32394	Canola	cytosol	37.37	37.17
CDY33422	Canola	cytosol	41.32	37.03
CDY37490	Canola	mitochondrion	16.32	36.9
CDY33027	Canola	cytosol	36.84	36.65
CDY03068	Canola	nucleus	38.95	36.36
CDY45456	Canola	cytosol	22.37	36.17
CDX82226	Canola	cytosol	25.0	36.12
CDY22955	Canola	cytosol	18.68	35.86
CDY71800	Canola	cytosol	35.79	35.79
CDY23772	Canola	cytosol	25.0	35.71
CDX82230	Canola	cytosol	37.89	35.64
CDY07015	Canola	cytosol	36.05	35.58
CDX99431	Canola	cytosol	18.68	35.5
CDX80282	Canola	cytosol	36.05	35.4
CDX94566	Canola	cytosol	20.0	35.02
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	32.89	35.01
CDX93257	Canola	cytosol	35.53	34.7
CDY40874	Canola	mitochondrion	33.68	34.13
CDY17609	Canola	plastid	39.74	34.09
CDY19516	Canola	cytosol	31.32	33.81
CDY03069	Canola	plastid	39.47	33.63
CDY71567	Canola	cytosol	35.0	33.08
CDX78894	Canola	cytosol	32.37	33.06
CDY69271	Canola	cytosol	31.32	32.69
CDY67865	Canola	cytosol	40.53	31.17
CDY01863	Canola	cytosol	20.26	30.92
CDY56208	Canola	nucleus	31.32	30.05
CDX72756	Canola	cytosol	32.89	29.9
CDY57669	Canola	cytosol	28.95	27.85
CDY70726	Canola	cytosol	15.53	26.58
CDY68693	Canola	cytosol	29.47	23.28

Protein Annotations

EnsemblPlants:CDY62603	EnsemblPlantsGene:GSBRNA2T00036443001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	ProteinID:CDY62603	ProteinID:CDY62603.1	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EE1B18	UniProt:A0A078JAQ4	MapMan:35.1	:	:

Description

BnaCnng40520DBnaCnng40520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAQ4]

Coordinates

chrLK034167:+:34116..35360

Molecular Weight (calculated)

43901.4 Da

IEP (calculated)

8.960

GRAVY (calculated)

-0.017

Length

380 amino acids

Sequence
(BLAST)

001: MTTIWDLPED MLVEEIFSRV PLNYIKSVRS TCKKWNTLLR SRIIGKAEAK KQFTGFMMMN HKVCFIEFHL QNAFIYYCNH PCIKQVSILD QINVSEVIYS
101: DGLLLCITKY ELLVWNPYLG QTRWIQPRTK FVGFEKCFLG YDKNLNHKIL SPITGFEIYD FSSDSWNVLD VTPPPDWEIT PNSCVSLKGN TYFCARRRES
201: FGPRLPLPFD SGNYAFVSLS CVREEQLAVL YQFRMTHEKI DIFVTNKISP SVVSWIKFIV GITGILLHLG DGSFFIDEET KLAVVFGRDM ITRSQTAHTI
301: ETSGYSKSVL IGNASAHRPL VCSSYAPSSV QIKQSQEALA RKINRRWNCH FYKNMLFVPC ITSFSKKFLV LVAAMYFYQR

Best Arabidopsis Sequence Match ( AT1G25150.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.