CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022464.1-P	Field mustard	cytosol	96.23	93.7
CDY69763	Canola	cytosol	36.39	52.94
AT3G20030.1	Thale cress	cytosol	56.33	51.99
CDX82277	Canola	cytosol	55.53	51.76
CDX82230	Canola	cytosol	55.8	51.24
CDY22955	Canola	cytosol	26.42	49.49
AT5G60560.2	Thale cress	cytosol	54.18	49.39
CDY33422	Canola	cytosol	55.8	48.82
CDY23772	Canola	cytosol	33.42	46.62
CDY37477	Canola	nucleus	23.18	45.99
CDX78893	Canola	cytosol	19.14	43.83
CDY37492	Canola	cytosol	25.61	43.78
CDY07015	Canola	cytosol	44.2	42.6
CDY45455	Canola	cytosol	12.13	42.45
CDY17608	Canola	cytosol	46.36	42.36
CDY19516	Canola	cytosol	40.16	42.33
CDY33027	Canola	cytosol	43.4	42.15
CDY03068	Canola	nucleus	45.82	41.77
CDY71800	Canola	cytosol	42.59	41.58
CDY43729	Canola	cytosol	42.59	41.15
CDX80282	Canola	cytosol	42.86	41.09
CDY69271	Canola	cytosol	40.16	40.93
CDY67601	Canola	cytosol	42.05	40.84
CDY43731	Canola	cytosol	19.14	40.57
CDX93257	Canola	cytosol	42.32	40.36
CDY67602	Canola	cytosol	39.35	40.33
CDY32394	Canola	cytosol	41.51	40.31
CDY43730	Canola	cytosol	27.49	40.16
CDY70218	Canola	plastid	8.36	39.74
CDX99431	Canola	cytosol	21.29	39.5
CDY37491	Canola	cytosol	10.24	39.18
CDY43733	Canola	cytosol	34.23	39.08
CDY17609	Canola	plastid	46.63	39.05
CDX84915	Canola	cytosol	35.31	38.99
CDY03069	Canola	plastid	45.82	38.12
CDX82226	Canola	cytosol	26.95	38.02
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	36.12	37.53
CDY45456	Canola	cytosol	23.72	37.45
CDY62603	Canola	cytosol	38.27	37.37
CDX94566	Canola	cytosol	21.83	37.33
CDY71567	Canola	cytosol	40.43	37.31
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	19.41	37.11
CDY40874	Canola	mitochondrion	37.47	37.07
CDY32393	Canola	mitochondrion	22.91	36.32
CDY70219	Canola	cytosol	17.25	35.96
CDX78894	Canola	cytosol	34.77	34.68
CDY01863	Canola	cytosol	23.18	34.54
CDY65844	Canola	extracellular	24.53	34.08
CDY56208	Canola	nucleus	35.85	33.59
CDX72756	Canola	cytosol	37.47	33.25
CDY67865	Canola	cytosol	42.59	31.98
CDY70726	Canola	cytosol	18.87	31.53
CDY37490	Canola	mitochondrion	13.75	30.36
CDY68693	Canola	cytosol	36.66	28.27
CDY57669	Canola	cytosol	29.92	28.1

Protein Annotations

EnsemblPlants:CDY25355	EnsemblPlantsGene:GSBRNA2T00029474001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY25355	ProteinID:CDY25355.1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EDC846	UniProt:A0A078GFV6	MapMan:35.1	:	:	:

Description

BnaA05g19290DBnaA05g19290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFV6]

Coordinates

chrLK032174:-:213279..214424

Molecular Weight (calculated)

43047.7 Da

IEP (calculated)

5.611

GRAVY (calculated)

-0.128

Length

371 amino acids

Sequence
(BLAST)

001: MISDLSRDLV EEILSKVPIT CLRAVRSTCK LWNVLSKDRV LCKTDITHQF IGFMVKEYRI CSMRFSLHGV GSSINEIGNL FNQAEICNII HCDGLLLCVT
101: KEDKIRSLVV WNPYLGQTRW IQPINNYHRF ESSDKYAFGY DHKNRNHKIL RVFDVNRYEI YDFSSNSWRI LDIIPDDDIW SRQRGASLKG NTYFDVVGEV
201: EIDEPHNLLL CFDFTREGFG PFLPLPFLHY NEDIGTLSTL RDEKLVVLYQ RMVCPEVEIW VTTNIEPDAV SWTPFLNIDM QPLDRGFQFG LCSGASFFID
301: EEMKIAVVFY IYRAEKMAKT RSYHSVCITG ENGYLDNLDL GDAAYRHVPM RENPYCCPLV CSYVPSLVQI N

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.