Factsheet for AT3G20030.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G60560.2	Thale cress	cytosol	61.94	61.18
CDY69763	Canola	cytosol	38.06	60.0
CDX82277	Canola	cytosol	57.71	58.29
Bra001764.1-P	Field mustard	cytosol	57.46	58.04
CDX82230	Canola	cytosol	56.72	56.44
Bra022464.1-P	Field mustard	cytosol	53.48	56.43
CDY25355	Canola	cytosol	51.99	56.33
Bra001800.1-P	Field mustard	cytosol	56.22	55.94
CDY33422	Canola	cytosol	55.72	52.83
CDY22955	Canola	cytosol	25.87	52.53
AT3G19880.1	Thale cress	cytosol	50.0	51.67
AT3G13680.1	Thale cress	cytosol	48.01	48.86
AT4G05080.1	Thale cress	cytosol	47.51	48.85
AT3G19560.1	Thale cress	cytosol	43.28	48.2
AT3G19890.1	Thale cress	cytosol	49.01	48.05
AT1G66490.1	Thale cress	cytosol	41.04	45.83
AT3G49510.1	Thale cress	cytosol	44.03	45.62
AT1G67450.1	Thale cress	cytosol	44.78	45.23
AT4G17200.1	Thale cress	cytosol	42.04	44.36
AT5G51000.1	Thale cress	cytosol	41.29	43.92
AT1G24800.1	Thale cress	nucleus	47.01	43.65
AT1G24881.1	Thale cress	nucleus	47.01	43.65
AT1G25055.1	Thale cress	nucleus	47.01	43.65
AT1G25150.1	Thale cress	nucleus	47.01	43.65
AT1G25211.1	Thale cress	nucleus	47.01	43.65
AT3G49520.1	Thale cress	cytosol	41.79	43.3
AT1G54550.1	Thale cress	cytosol	37.06	41.16
AT3G13820.1	Thale cress	nucleus	41.54	40.24
AT1G59680.2	Thale cress	cytosol	31.59	40.06
AT3G13830.1	Thale cress	plastid	37.06	39.52
AT3G14030.1	Thale cress	cytosol	18.91	38.0
AT1G11810.1	Thale cress	cytosol	35.57	37.93
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	47.76	32.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:821542	UniProt:A0A178VCH7	ProteinID:AEE76322.1	ArrayExpress:AT3G20030
EnsemblPlantsGene:AT3G20030	RefSeq:AT3G20030	TAIR:AT3G20030	RefSeq:AT3G20030-TAIR-G	EnsemblPlants:AT3G20030.1	TAIR:AT3G20030.1
Unigene:At.53396	ProteinID:BAB01860.1	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	RefSeq:NP_188638.1	ProteinID:OAP04097.1
PFAM:PF00646	PFAM:PF07734	PANTHER:PTHR31790	UniProt:Q9LJZ8	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00000A3F1F	:	:	:

Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]

Coordinates

chr3:+:6990254..6991462

Molecular Weight (calculated)

47027.7 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.397

Length

402 amino acids

Sequence
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.