Factsheet for Bra001800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82230	Canola	cytosol	99.5	99.5
Bra001764.1-P	Field mustard	cytosol	75.99	77.14
AT3G20030.1	Thale cress	cytosol	55.94	56.22
Bra022464.1-P	Field mustard	cytosol	51.98	55.12
AT5G60560.2	Thale cress	cytosol	54.21	53.81
Bra002578.1-P	Field mustard	cytosol	44.55	48.39
Bra017069.1-P	Field mustard	cytosol	45.3	47.53
Bra033383.1-P	Field mustard	cytosol	45.05	47.15
Bra021512.1-P	Field mustard	plastid	43.07	44.39
Bra021825.1-P	Field mustard	cytosol	31.68	42.95
Bra020991.1-P	Field mustard	cytosol	42.57	42.89
Bra024829.1-P	Field mustard	cytosol	42.82	42.61
Bra041044.1-P	Field mustard	cytosol	33.42	41.28
Bra021823.1-P	Field mustard	cytosol	36.63	40.66
Bra001803.1-P	Field mustard	cytosol	37.13	40.21
Bra017242.1-P	Field mustard	cytosol	38.12	39.69
Bra029507.1-P	Field mustard	cytosol	37.87	38.64
Bra024830.1-P	Field mustard	nucleus, plastid	42.08	38.46
Bra018376.1-P	Field mustard	cytosol	22.03	38.2
Bra017247.1-P	Field mustard	mitochondrion	32.18	38.01
Bra013348.1-P	Field mustard	cytosol	34.65	37.63
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	32.92	37.25
Bra041045.1-P	Field mustard	nucleus	34.65	36.94
Bra017228.1-P	Field mustard	cytosol	23.02	36.47
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	34.41	35.28

Protein Annotations

EnsemblPlants:Bra001800.1	EnsemblPlants:Bra001800.1-P	EnsemblPlantsGene:Bra001800	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PFAM:PF00646	PFAM:PF07734	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00025405D3	UniProt:M4CC70	MapMan:35.1	:	:	:

Description

AT3G20030 (E=5e-119) | F-box family protein

Coordinates

chrA03:-:18554672..18555886

Molecular Weight (calculated)

46672.0 Da

IEP (calculated)

6.116

GRAVY (calculated)

-0.171

Length

404 amino acids

Sequence
(BLAST)

001: MTIISDLSWD LVEKILARVP IFSVGAVRST CKQWNRLSKV RVLCKAEAKR HQFLCFMLKN YKLCSMRFDL HGILHGEQFV DPSIREITGD SLIHVKVTKV
101: FHCDGLLLCV TKDKEENKTS LVVWNPYLGQ TRWIQPKNYY YRLDVYALGY DINKRKHKIL RFFADAYNVS LYEIYDICSD SWRVLDITQD WGIMFYHRGV
201: SLKGNTYFFA KEKIVLEAGG PESIAEPHAI LLSFDFTKER FGPPLPLPVE HYIEDTGTLS SLRDEKPAAL YQSSSMCNVK IWVTTKIEPN AVSWVPFLEI
301: DLEPLRGFEF QFHHYGASFF IDEEKKVAVV FQIDESEMTC YDTAYLIGEN GYFEKIGLGE ADNHLDSIPM EDYCPLVCSC SYVPSLVHIN NEFVKDKANE
401: GDHH

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.