CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001800.1-P	Field mustard	cytosol	99.5	99.5
CDY22955	Canola	cytosol	45.54	92.93
CDY69763	Canola	cytosol	50.74	80.39
CDX82277	Canola	cytosol	76.24	77.39
CDY33422	Canola	cytosol	64.36	61.32
AT3G20030.1	Thale cress	cytosol	56.44	56.72
CDY25355	Canola	cytosol	51.24	55.8
AT5G60560.2	Thale cress	cytosol	54.46	54.05
CDY70218	Canola	plastid	9.41	48.72
CDY33027	Canola	cytosol	45.54	48.17
CDY71800	Canola	cytosol	45.3	48.16
CDX80282	Canola	cytosol	45.54	47.55
CDY07015	Canola	cytosol	45.3	47.53
CDY37492	Canola	cytosol	25.5	47.47
CDX93257	Canola	cytosol	43.81	45.5
CDY37477	Canola	nucleus	21.04	45.45
CDX78893	Canola	cytosol	18.07	45.06
CDY37491	Canola	cytosol	10.64	44.33
CDY23772	Canola	cytosol	28.96	43.98
CDY17608	Canola	cytosol	43.07	42.86
CDY03068	Canola	nucleus	42.82	42.51
CDY43729	Canola	cytosol	40.35	42.45
CDY67602	Canola	cytosol	37.13	41.44
CDY43733	Canola	cytosol	33.17	41.23
CDY69271	Canola	cytosol	37.13	41.21
CDY43731	Canola	cytosol	17.57	40.57
CDY45455	Canola	cytosol	10.64	40.57
CDY19516	Canola	cytosol	35.15	40.34
CDY32394	Canola	cytosol	37.87	40.05
CDX99431	Canola	cytosol	19.8	40.0
CDY67601	Canola	cytosol	37.62	39.79
CDY32393	Canola	mitochondrion	23.02	39.74
CDX84915	Canola	cytosol	32.92	39.58
CDY03069	Canola	plastid	43.32	39.24
CDY43730	Canola	cytosol	24.5	38.98
CDY71567	Canola	cytosol	38.37	38.56
CDY17609	Canola	plastid	42.08	38.37
CDY40874	Canola	mitochondrion	35.4	38.13
CDY62603	Canola	cytosol	35.64	37.89
CDX94566	Canola	cytosol	20.3	37.79
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	33.17	37.53
CDY45456	Canola	cytosol	21.53	37.02
CDX78894	Canola	cytosol	33.91	36.83
CDX82226	Canola	cytosol	23.27	35.74
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.08	35.57
CDY67865	Canola	cytosol	43.32	35.43
CDY56208	Canola	nucleus	34.65	35.35
CDY65844	Canola	extracellular	23.27	35.21
CDY01863	Canola	cytosol	20.79	33.73
CDY70219	Canola	cytosol	14.85	33.71
CDX72756	Canola	cytosol	34.41	33.25
CDY57669	Canola	cytosol	29.46	30.13
CDY37490	Canola	mitochondrion	12.38	29.76
CDY70726	Canola	cytosol	16.34	29.73
CDY68693	Canola	cytosol	33.42	28.07

Protein Annotations

EnsemblPlants:CDX82230	EnsemblPlantsGene:GSBRNA2T00137329001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	ProteinID:CDX82230	ProteinID:CDX82230.1	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EEC6E3	MapMan:35.1	:	:	:

Description

BnaA03g35910D

Coordinates

chrLK031828:+:106478..107692

Molecular Weight (calculated)

46741.1 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.175

Length

404 amino acids

Sequence
(BLAST)

001: MTIISDLSWD LVEKILARVP IFSVGAVRST CKQWNRLSKV RVLCKAEAKR HQFLRFMLKN YKLCSMRFDL HGILHGEQFV DPSIREITGD SLIHVKVTKV
101: FHCDGLLLCV TKDKEENKTS LVVWNPYLGQ TRWIQPKNYY YRLDVYALGY DINKRKHKIL RFFADAYNVS LYEIYDICSD SWRVLDITQD WGIMFYHRGV
201: SLKGNTYFFA KEKIVLEAGG PESIAEPHAI LLSFDFTKER FGPPLPLPVE HYIEDTGTLS SLRDEKLAAL YQSSSMCNVK IWVTTKIEPN AVSWVPFLEI
301: DLEPLRGFEF QFHHYGASFF IDEEKKVAVV FQIDESEMTC YDTAYLIGEN GYFEKIGLGE ADNHLDSIPM EDYCPLVCSC SYVPSLVHIN NEFVKDKANE
401: GDHH

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.