CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024830.1-P	Field mustard	nucleus, plastid	92.55	92.76
CDY03069	Canola	plastid	89.62	89.01
CDY03068	Canola	nucleus	74.04	80.59
CDY17608	Canola	cytosol	72.69	79.31
CDY25355	Canola	cytosol	39.05	46.63
CDX78893	Canola	cytosol	16.93	46.3
CDY43730	Canola	cytosol	26.41	46.06
CDY43731	Canola	cytosol	17.83	45.14
CDX99431	Canola	cytosol	20.32	45.0
CDY43729	Canola	cytosol	38.15	44.01
CDY33027	Canola	cytosol	37.7	43.72
CDY71800	Canola	cytosol	37.25	43.42
CDX80282	Canola	cytosol	37.47	42.89
CDY45455	Canola	cytosol	10.16	42.45
CDY67601	Canola	cytosol	36.57	42.41
CDX82230	Canola	cytosol	38.37	42.08
CDY32394	Canola	cytosol	36.12	41.88
CDY37477	Canola	nucleus	17.61	41.71
CDY07015	Canola	cytosol	36.12	41.56
CDY43733	Canola	cytosol	30.25	41.23
CDX82277	Canola	cytosol	37.02	41.21
CDY67602	Canola	cytosol	33.63	41.16
CDX93257	Canola	cytosol	36.12	41.13
CDY37492	Canola	cytosol	20.09	41.01
CDY40874	Canola	mitochondrion	34.54	40.8
CDY22955	Canola	cytosol	18.06	40.4
CDX78894	Canola	cytosol	33.86	40.32
CDY71567	Canola	cytosol	36.34	40.05
CDY69763	Canola	cytosol	23.02	40.0
CDY62603	Canola	cytosol	34.09	39.74
CDY33422	Canola	cytosol	37.92	39.62
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.16	39.18
CDY23772	Canola	cytosol	23.48	39.1
CDX84915	Canola	cytosol	29.57	38.99
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	31.38	38.94
CDY32393	Canola	mitochondrion	20.54	38.89
CDX82226	Canola	cytosol	23.02	38.78
CDY70218	Canola	plastid	6.77	38.46
CDY70219	Canola	cytosol	14.9	37.08
CDY69271	Canola	cytosol	30.25	36.81
CDY19516	Canola	cytosol	29.12	36.65
CDX72756	Canola	cytosol	34.31	36.36
CDX94566	Canola	cytosol	17.61	35.94
CDY56208	Canola	nucleus	32.05	35.86
CDY65844	Canola	extracellular	21.44	35.58
CDY01863	Canola	cytosol	19.64	34.94
CDY67865	Canola	cytosol	38.37	34.41
CDY37491	Canola	cytosol	7.45	34.02
CDY45456	Canola	cytosol	17.83	33.62
CDY37490	Canola	mitochondrion	12.64	33.33
CDY70726	Canola	cytosol	16.7	33.33
CDY57669	Canola	cytosol	25.28	28.35
CDY68693	Canola	cytosol	29.35	27.03

Protein Annotations

EnsemblPlants:CDY17609	EnsemblPlantsGene:GSBRNA2T00001816001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:Gal_Oxase/kelch_b-propeller	PANTHER:PTHR31790	PFAM:PF07734	ProteinID:CDY17609
ProteinID:CDY17609.1	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEB079	UniProt:A0A078FWX7
MapMan:35.1	:	:	:	:	:

Description

BnaA06g34280DBnaA06g34280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWX7]

Coordinates

chrLK032076:+:83076..84517

Molecular Weight (calculated)

51071.7 Da

IEP (calculated)

9.202

GRAVY (calculated)

-0.340

Length

443 amino acids

Sequence
(BLAST)

001: MLHAEFVSTS SLSMGKSRSK PASKFETTLK KRKNLGKEES KECLKTRANL KKRKKHVLNV GRVTRFSDLP LDLVGDKILS KLPITFLGAV RSTCKLWNAL
101: SREWILSNAA ELKRQVLGFM TMDYKIYSLR FHLHKDKYRG IYQSRKHIDI LDQVEISKVF HCHGLLLCVL KDNSRLAVWN PYLGQTRWIE PRTKFHKCDM
201: YALGYDKKRN HKILRCFYGY DFMISKKHSF MVEIYDLRSH SWKVLDVASD LAIEYDANGA SLKGNTYFFA QEEIPPGHGS IVVSDLEDFL ICFDFTNERF
301: GQRLPLPFHS SLQEAVTLSC VGEDQLAVLY ERLYTLGTLE FWVTTKIEPN AVSWSKFLNV DMTPHDGYLS HVGSFIIDEE EKVAMVFDGH RDDQPSKTRR
401: YHRAMTVGDG YCGLYEGLRK CPTESRPPLV CSSSYLPSLV QIN

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.