Factsheet for Bra024830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17609	Canola	plastid	92.76	92.55
Bra024829.1-P	Field mustard	cytosol	72.62	79.06
Bra022464.1-P	Field mustard	cytosol	40.5	46.98
Bra020991.1-P	Field mustard	cytosol	42.31	46.63
Bra002578.1-P	Field mustard	cytosol	36.88	43.82
Bra001764.1-P	Field mustard	cytosol	38.91	43.22
Bra001803.1-P	Field mustard	cytosol	36.43	43.16
Bra017242.1-P	Field mustard	cytosol	37.78	43.04
Bra021512.1-P	Field mustard	plastid	37.56	42.35
Bra017069.1-P	Field mustard	cytosol	36.88	42.34
Bra033383.1-P	Field mustard	cytosol	36.88	42.23
Bra041044.1-P	Field mustard	cytosol	31.22	42.2
Bra001800.1-P	Field mustard	cytosol	38.46	42.08
Bra017247.1-P	Field mustard	mitochondrion	31.67	40.94
Bra041045.1-P	Field mustard	nucleus	34.62	40.37
Bra013348.1-P	Field mustard	cytosol	33.94	40.32
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	31.45	38.94
Bra021825.1-P	Field mustard	cytosol	26.24	38.93
Bra029507.1-P	Field mustard	cytosol	33.26	37.12
Bra017228.1-P	Field mustard	cytosol	21.27	36.86
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	32.81	36.8
Bra021823.1-P	Field mustard	cytosol	30.09	36.54
Bra018376.1-P	Field mustard	cytosol	17.65	33.48

Protein Annotations

EnsemblPlants:Bra024830.1	EnsemblPlants:Bra024830.1-P	EnsemblPlantsGene:Bra024830	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
PANTHER:PTHR31790	PFAM:PF00646	PFAM:PF07734	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI000253F8D9	UniProt:M4E7S4	MapMan:35.1	:	:	:

Description

AT1G24881 (E=1e-096) | CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA06:+:23666250..23667690

Molecular Weight (calculated)

50851.3 Da

IEP (calculated)

9.307

GRAVY (calculated)

-0.353

Length

442 amino acids

Sequence
(BLAST)

001: MLHAEFVSTS SLSMGKSRNK PASKFEATLK KPKNLGKAES KECLKTRANL KKRKKHVLNV GRVTRFSDLP LDLVGDKILS KLPITSLGAV RSTCKLWNAL
101: SREWILSNAA KLKRQVLGFM TMDYKIYSLR FHLHKDKYRG VYQSRKHIDI LNQVEISKVF HCHGLLLCVL KDKSRLVVWN PYLGQTRWIE PRTNFHKCDR
201: YAFGYDKNRN HKILRCFDDY DIINKKLSFM VEIYDLRSHS WKVLDVTSDL AIEYDANGAS LKGNTYFFVQ EEIPPGDGSI VVSDLEDFLI CFDFTNERFG
301: QRLPLPFHSS LQEAVTLSCV GEDQLAVLYE RLYTIGTLEF WVTTKIEPNA VTWSKFLNVD MTPHDGYLSH VGSFIIDEEE KAAMVFDGRR DDQPSKTRRY
401: HRAMTVGDGY CGLYEGLRKC PTETRPPLVC SSSYLPSLVQ IN

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.