Factsheet for Bra017069.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07015	Canola	cytosol	98.96	98.96
Bra002578.1-P	Field mustard	cytosol	77.4	80.11
Bra033383.1-P	Field mustard	cytosol	79.48	79.27
Bra001800.1-P	Field mustard	cytosol	47.53	45.3
Bra001764.1-P	Field mustard	cytosol	46.23	44.72
AT4G17200.1	Thale cress	cytosol	43.64	44.09
Bra022464.1-P	Field mustard	cytosol	43.38	43.83
Bra024829.1-P	Field mustard	cytosol	42.34	40.15
Bra020991.1-P	Field mustard	cytosol	41.3	39.65
Bra021512.1-P	Field mustard	plastid	39.74	39.03
Bra017242.1-P	Field mustard	cytosol	37.66	37.37
Bra041044.1-P	Field mustard	cytosol	31.43	37.0
Bra024830.1-P	Field mustard	nucleus, plastid	42.34	36.88
Bra001803.1-P	Field mustard	cytosol	34.81	35.92
Bra017247.1-P	Field mustard	mitochondrion	31.69	35.67
Bra013348.1-P	Field mustard	cytosol	33.51	34.68
Bra041045.1-P	Field mustard	nucleus	34.03	34.56
Bra021823.1-P	Field mustard	cytosol	32.21	34.07
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	30.65	33.05
Bra021825.1-P	Field mustard	cytosol	25.45	32.89
Bra029507.1-P	Field mustard	cytosol	33.77	32.83
Bra018376.1-P	Field mustard	cytosol	19.48	32.19
Bra017228.1-P	Field mustard	cytosol	21.3	32.16
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	30.91	30.2

Protein Annotations

EnsemblPlants:Bra017069.1	EnsemblPlants:Bra017069.1-P	EnsemblPlantsGene:Bra017069	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544BAB	UniProt:M4DKN8
MapMan:35.1	:	:	:	:	:

Description

AT3G20030 (E=5e-091) | F-box family protein

Coordinates

chrA04:-:16807134..16808291

Molecular Weight (calculated)

44007.0 Da

IEP (calculated)

6.671

GRAVY (calculated)

-0.203

Length

385 amino acids

Sequence
(BLAST)

001: MTTISDLSRD LIGEILSKVP ITCVGKLRST CKRWNASTRE RLVGKAGAKQ SMGFMMMDYK VCSARINLNG ILKDEEGSVV GPISIKPIDK LNEIEISKVF
101: HCDGLLLCAT RLLVWNPYLG QTKWIQPKKA YHRLDRYALG YDKNKKSYKI LRFVDDQYLP TYLFEFEIYD MNSNLWRALD VTPDWDIEYF RPGLTVKGNT
201: YFFAKQKVIF EEGANEADGD VDDFLVSFDF TKERFGPHLH VPFHSHLHED TVALSSVGEN KLAALYQSED INAMEIWVTT KIEPHMVSWS KLYFLAVNNM
301: IPLIGASFFI DEEKKLAVVF ALDIHGRYKR ACITGENGYF KQVDLGEVAV NSDDEDPYCF PVCSYVPSLV HINQGLVLSG KRKER

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.