Factsheet for Bra001803.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82226	Canola	cytosol	65.68	93.16
AT1G66490.1	Thale cress	cytosol	45.31	46.94
Bra020991.1-P	Field mustard	cytosol	45.58	42.39
Bra022464.1-P	Field mustard	cytosol	43.16	42.26
Bra029507.1-P	Field mustard	cytosol	44.24	41.67
Bra017242.1-P	Field mustard	cytosol	42.9	41.24
Bra021512.1-P	Field mustard	plastid	42.63	40.56
Bra001764.1-P	Field mustard	cytosol	43.16	40.45
AT1G59680.2	Thale cress	cytosol	33.78	39.75
Bra002578.1-P	Field mustard	cytosol	38.87	38.98
Bra021825.1-P	Field mustard	cytosol	31.1	38.93
Bra024829.1-P	Field mustard	cytosol	42.09	38.67
Bra041044.1-P	Field mustard	cytosol	33.51	38.23
Bra033383.1-P	Field mustard	cytosol	39.41	38.08
Bra017247.1-P	Field mustard	mitochondrion	34.58	37.72
Bra018376.1-P	Field mustard	cytosol	23.32	37.34
Bra041045.1-P	Field mustard	nucleus	37.8	37.2
Bra001800.1-P	Field mustard	cytosol	40.21	37.13
AT3G13820.1	Thale cress	nucleus	41.29	37.11
Bra013348.1-P	Field mustard	cytosol	36.46	36.56
AT3G14030.1	Thale cress	cytosol	19.57	36.5
Bra024830.1-P	Field mustard	nucleus, plastid	43.16	36.43
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	34.85	36.41
Bra017069.1-P	Field mustard	cytosol	35.92	34.81
Bra017228.1-P	Field mustard	cytosol	23.59	34.51
Bra021823.1-P	Field mustard	cytosol	32.98	33.79
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	33.78	31.98

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra001803	EnsemblPlants:Bra001803.1	EnsemblPlants:Bra001803.1-P	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	UniProt:M4CC73	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181
PANTHER:PTHR44355	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00025405D6
SEG:seg	:	:	:	:	:

Description

AT3G13680 (E=6e-073) | F-box family protein

Coordinates

chrA03:-:18573135..18574256

Molecular Weight (calculated)

43141.1 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.114

Length

373 amino acids

Sequence
(BLAST)

001: MAMAMSDLPG ELVTEILSRV PLTSLRALRC TCKTWEVLSK THIIGKTDAE GTFLGFMVID YNLCSLKLDL QGTHDNGNLV YRPSIERVWL LEQAEIWEVF
101: QWDGLLLCVI KDESRLLVWN PYLRQLRWIQ TRDKLHSAYM YGLGYGNNNN NDRNHKILRV LDVTKSSEPG PLFEIYDFNS SSWRVLDVHP GNCVIKSGVS
201: LKGNTYFLAE ETCLEGFVVE SQYILLCFDF TAERFGQHLI LPFGAGVRFI KAVVLSRVRD EQLAVLHQPE DNNVMEFWIT SKIEHNAASW TRFLRVEMTP
301: QSFVTESFFI DEEKKLALVS GFFKLFRHIY KRAYIIREQG CIESVEMRKD REPGNKLVFS SYAPSLVQLQ INR

Best Arabidopsis Sequence Match ( AT1G66490.1 )
(BLAST)

001: MRTISDLPVA LVEEILSRVP LTSLSAVRST CKTWNALSKT QIFGKTRQQF LGFMMIDFGL YSIKFDLQGL NYESDFVEPS IKRVSILDQL DIFKVFHCEG
101: LLLCVFRGNR WPVVWNPYLG GTGWIQPISD FHKYQVSDKF AFGYENKNHF FGFYDIYDLN SSAWKVLDVN PDCDIKCGVS LKGKTYFFAK EIAKAPNVKD
201: FLVCFDFTAE RFGPRLPLPF HSCGLFSEHV TLSCVRDEHL AVLYRRYNGV MEIYITTKIE PNEVFWSNFL KVDLTTFPDR FYGSRSHYFF IDEEKKVAVV
301: FKNEPEWTMD CSYQTAYIIG KGGYLKSVKF GETPNDRKHN NAWNINSFML SSYVPSLVQL

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT1G66490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.