Factsheet for Bra017228.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65844	Canola	extracellular	83.14	79.4
Bra017247.1-P	Field mustard	mitochondrion	58.82	43.86
Bra017242.1-P	Field mustard	cytosol	63.92	42.01
Bra041044.1-P	Field mustard	cytosol	50.2	39.14
Bra041045.1-P	Field mustard	nucleus	53.33	35.88
Bra018376.1-P	Field mustard	cytosol	28.24	30.9
AT3G13680.1	Thale cress	cytosol	45.88	29.62
Bra021825.1-P	Field mustard	cytosol	29.02	24.83
Bra001764.1-P	Field mustard	cytosol	38.04	24.37
Bra021512.1-P	Field mustard	plastid	36.86	23.98
Bra001803.1-P	Field mustard	cytosol	34.51	23.59
Bra024829.1-P	Field mustard	cytosol	37.25	23.4
Bra013348.1-P	Field mustard	cytosol	34.12	23.39
Bra022464.1-P	Field mustard	cytosol	34.9	23.36
Bra001800.1-P	Field mustard	cytosol	36.47	23.02
Bra020991.1-P	Field mustard	cytosol	35.69	22.69
Bra002578.1-P	Field mustard	cytosol	31.76	21.77
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	33.33	21.57
Bra033383.1-P	Field mustard	cytosol	32.55	21.5
Bra017069.1-P	Field mustard	cytosol	32.16	21.3
Bra024830.1-P	Field mustard	nucleus, plastid	36.86	21.27
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	28.63	20.45
Bra029507.1-P	Field mustard	cytosol	31.37	20.2
Bra021823.1-P	Field mustard	cytosol	26.67	18.68

Protein Annotations

EnsemblPlants:Bra017228.1	EnsemblPlants:Bra017228.1-P	EnsemblPlantsGene:Bra017228	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	PFAM:PF07734
SEG:seg	TIGRFAMs:TIGR01640	UniParc:UPI0002544246	UniProt:M4DL47	MapMan:35.1	:

Description

AT3G13680 (E=8e-044) | F-box family protein

Coordinates

chrA04:+:15882181..15883145

Molecular Weight (calculated)

28954.8 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.196

Length

255 amino acids

Sequence
(BLAST)

001: MDLRRISLMN FDLPKDDGDP SIKQGKRGGS NPDSVVSIGF ELYDFNSSSW KVLDDVTPEW MIRPHRDSVS LKGNAYFLTN LRGFFICFDF TTESFGPLLP
101: LPLRPGHGGV SVSLSCVRED QLAVLYQHSD KTIEISVTDK IGHDVVSWTK FLKLLTGFRV NPNYGSFFID EEKKIAVVFV LERAKACRYQ TAHVIGQNGY
201: FKSVRIREAP YLQNGSSPRK KYHPPPLCSS YLLSFTATQP TRLMETNVII FFRII

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.