Factsheet for Bra002578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33027	Canola	cytosol	99.46	96.86
Bra033383.1-P	Field mustard	cytosol	95.16	91.71
CDX80282	Canola	cytosol	91.94	88.37
Bra017069.1-P	Field mustard	cytosol	80.11	77.4
AT4G17200.1	Thale cress	cytosol	46.77	45.67
Bra001800.1-P	Field mustard	cytosol	48.39	44.55
Bra001764.1-P	Field mustard	cytosol	46.77	43.72
Bra022464.1-P	Field mustard	cytosol	43.82	42.78
Bra024829.1-P	Field mustard	cytosol	44.09	40.39
Bra020991.1-P	Field mustard	cytosol	42.47	39.4
Bra021512.1-P	Field mustard	plastid	41.4	39.29
Bra017242.1-P	Field mustard	cytosol	40.59	38.92
Bra001803.1-P	Field mustard	cytosol	38.98	38.87
Bra017247.1-P	Field mustard	mitochondrion	34.41	37.43
Bra041044.1-P	Field mustard	cytosol	32.8	37.31
Bra024830.1-P	Field mustard	nucleus, plastid	43.82	36.88
Bra013348.1-P	Field mustard	cytosol	36.29	36.29
Bra041045.1-P	Field mustard	nucleus	36.29	35.62
Bra029507.1-P	Field mustard	cytosol	36.29	34.09
Bra021823.1-P	Field mustard	cytosol	33.06	33.79
Bra021825.1-P	Field mustard	cytosol	26.61	33.22
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	31.45	32.77
Bra018376.1-P	Field mustard	cytosol	20.43	32.62
Bra017228.1-P	Field mustard	cytosol	21.77	31.76
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	33.06	31.22

Protein Annotations

EnsemblPlants:Bra002578.1	EnsemblPlants:Bra002578.1-P	EnsemblPlantsGene:Bra002578	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002543B12	UniProt:M4CEE7
MapMan:35.1	:	:	:	:	:

Description

AT4G17200 (E=8e-097) | F-box family protein

Coordinates

chrA10:+:8780563..8781826

Molecular Weight (calculated)

42946.7 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.124

Length

372 amino acids

Sequence
(BLAST)

001: MTTISDLSRY LIGEILSKVP ITCVGKVRCT CKRWNASSRH RIFGKAVARQ FMGFMMIDFK VCSVRIDLNG IVKDEEGSGP VSIKPIDKLN EIEISKVFHC
101: DGLLLCTTRD NTRLLVWNPY LGQMKWIEPK TAYHRLDRYA LGYDTNKKSY KILRFVDDAY WPTSLFEFEI YDMNSNLWRA LDVTPDWDIE FFRPGLTVKG
201: NTYFFAKQKI ILDEGEADGD VDDFLVSFDF TKERFGPHLH VPFHSHLDED TVVLSSVGEE KLAALYQCMD RNMMEIWVTT KIEPHAVSWS KLYFLAVDKM
301: VPLLSGSFFI DEEKKLALAF TLDTLGRYKR AYIIGEDEYF KQVDLGEAVV IPDDDDYPYC FPLVCSYVPS LA

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.