Factsheet for Bra033383.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002578.1-P	Field mustard	cytosol	91.71	95.16
CDY71800	Canola	cytosol	92.23	93.68
Bra017069.1-P	Field mustard	cytosol	79.27	79.48
AT4G17200.1	Thale cress	cytosol	45.08	45.67
Bra001800.1-P	Field mustard	cytosol	47.15	45.05
Bra001764.1-P	Field mustard	cytosol	45.08	43.72
Bra022464.1-P	Field mustard	cytosol	43.01	43.57
Bra024829.1-P	Field mustard	cytosol	43.52	41.38
Bra020991.1-P	Field mustard	cytosol	41.97	40.4
Bra021512.1-P	Field mustard	plastid	40.16	39.54
Bra001803.1-P	Field mustard	cytosol	38.08	39.41
Bra017242.1-P	Field mustard	cytosol	38.6	38.4
Bra041044.1-P	Field mustard	cytosol	31.87	37.61
Bra017247.1-P	Field mustard	mitochondrion	32.9	37.13
Bra013348.1-P	Field mustard	cytosol	35.75	37.1
Bra024830.1-P	Field mustard	nucleus, plastid	42.23	36.88
Bra041045.1-P	Field mustard	nucleus	34.72	35.36
Bra021823.1-P	Field mustard	cytosol	32.12	34.07
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	31.09	33.61
Bra018376.1-P	Field mustard	cytosol	19.95	33.05
Bra021825.1-P	Field mustard	cytosol	25.39	32.89
Bra029507.1-P	Field mustard	cytosol	33.68	32.83
Bra017228.1-P	Field mustard	cytosol	21.5	32.55
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	32.38	31.73

Protein Annotations

EnsemblPlants:Bra033383.1	EnsemblPlants:Bra033383.1-P	EnsemblPlantsGene:Bra033383	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002544A09	UniProt:M4EX48
MapMan:35.1	:	:	:	:	:

Description

AT4G17200 (E=9e-097) | F-box family protein

Coordinates

chrA10:-:3947786..3948946

Molecular Weight (calculated)

44470.6 Da

IEP (calculated)

5.481

GRAVY (calculated)

-0.119

Length

386 amino acids

Sequence
(BLAST)

001: MTTVSDLSRY LIGEILSKVP ITCVGKVRCT CKRWNASSRH RIVGKTVARQ FMGFMMMDFK VCSIRIDLNG IVKDEEGSGP VSIKLIDNLN KIEIIKVFHC
101: DGLLLCTTRD NTRLLVWNPY LGQMKWIEPK TAYHRLDRYA LGYDTNKKSY KILRFVDDAY WPTPLFEFEI YDMNSNLWRA LDVTPDWDIE FFRPGLTVKG
201: NTYFFAKQKI ILDEGEADGD VDDFLVSFDF TKERFGPHLH VPFHSHLDED TVVLSSVGEE KLAALYQCMD RNMMEIWVTT KTEPHVVSWS NLYFLAVDKM
301: VPLFSGSFFI DEEKKLALAF TLDTLGRYKR AYIIGEDGYF KQVDLGEAVV IPDDDGYPYC FPLVCSYVPS LVQINQGLVL SGKREE

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.