Factsheet for Bra022464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25355	Canola	cytosol	93.7	96.23
Bra001764.1-P	Field mustard	cytosol	56.17	53.77
AT3G20030.1	Thale cress	cytosol	56.43	53.48
Bra001800.1-P	Field mustard	cytosol	55.12	51.98
AT5G60560.2	Thale cress	cytosol	54.33	50.86
Bra021825.1-P	Field mustard	cytosol	34.91	44.63
Bra002578.1-P	Field mustard	cytosol	42.78	43.82
Bra024829.1-P	Field mustard	cytosol	46.46	43.6
Bra017069.1-P	Field mustard	cytosol	43.83	43.38
Bra001803.1-P	Field mustard	cytosol	42.26	43.16
Bra033383.1-P	Field mustard	cytosol	43.57	43.01
Bra021512.1-P	Field mustard	plastid	43.31	42.09
Bra021823.1-P	Field mustard	cytosol	39.11	40.93
Bra020991.1-P	Field mustard	cytosol	42.78	40.65
Bra024830.1-P	Field mustard	nucleus, plastid	46.98	40.5
Bra017242.1-P	Field mustard	cytosol	41.21	40.46
Bra041044.1-P	Field mustard	cytosol	34.38	40.06
Bra017247.1-P	Field mustard	mitochondrion	34.12	38.01
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	35.17	37.53
Bra041045.1-P	Field mustard	nucleus	37.27	37.47
Bra018376.1-P	Field mustard	cytosol	22.83	37.34
Bra029507.1-P	Field mustard	cytosol	37.8	36.36
Bra013348.1-P	Field mustard	cytosol	34.91	35.75
Bra017228.1-P	Field mustard	cytosol	23.36	34.9
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	35.96	34.77

Protein Annotations

EnsemblPlants:Bra022464.1	EnsemblPlants:Bra022464.1-P	EnsemblPlantsGene:Bra022464	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PFAM:PF00646	PFAM:PF07734	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0002547CC4	UniProt:M4E116	MapMan:35.1	:	:	:

Description

AT3G20030 (E=7e-105) | F-box family protein

Coordinates

chrA05:+:17513030..17514175

Molecular Weight (calculated)

44233.2 Da

IEP (calculated)

5.626

GRAVY (calculated)

-0.134

Length

381 amino acids

Sequence
(BLAST)

001: MISDLSRDLV EEILSKVPIT CLRAVRSTCK LWNVLSKDRV LCKTDITHQF IGFMVKEYRI CSMRFSLHGV GSSIKEIGNL FNQAEICNII HCDGLLLCVT
101: KEDKTRSLVV WNPYLGQTRW IQPINNYHRF ESSDKYAFGY DHKNRNHKIL RVFDVNRYEI YDFSSNSWRI LDIIPDDDIW SRQRGASLKG NTYFVAKEKT
201: LVDEDVVGEV EIDEPHNLLL CFDFTREGFG PFLPLPFLHY NEDIGTLSTL RDEKLVVLYQ RMVCPEVEIW VTTNIEPDAV SWTPFLNIDM QPLDRGFQFV
301: LCSGASFFID EEMKIAVVFY IYRAEKMAKT RSYHSVCITG ENGYLDNLDL GDAVYRHVPM RENPYCCPLV CSYVPSLVQI N

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.