Factsheet for Bra001764.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82277	Canola	cytosol	98.74	98.74
Bra001800.1-P	Field mustard	cytosol	77.14	75.99
AT3G20030.1	Thale cress	cytosol	58.04	57.46
Bra022464.1-P	Field mustard	cytosol	53.77	56.17
AT5G60560.2	Thale cress	cytosol	54.02	52.83
Bra002578.1-P	Field mustard	cytosol	43.72	46.77
Bra021512.1-P	Field mustard	plastid	45.73	46.43
Bra017069.1-P	Field mustard	cytosol	44.72	46.23
Bra033383.1-P	Field mustard	cytosol	43.72	45.08
Bra021825.1-P	Field mustard	cytosol	33.17	44.3
Bra001803.1-P	Field mustard	cytosol	40.45	43.16
Bra041044.1-P	Field mustard	cytosol	35.18	42.81
Bra017242.1-P	Field mustard	cytosol	40.7	41.75
Bra020991.1-P	Field mustard	cytosol	41.96	41.65
Bra024829.1-P	Field mustard	cytosol	42.46	41.63
Bra021823.1-P	Field mustard	cytosol	37.94	41.48
Bra018376.1-P	Field mustard	cytosol	23.87	40.77
Bra041045.1-P	Field mustard	nucleus	37.19	39.05
Bra024830.1-P	Field mustard	nucleus, plastid	43.22	38.91
Bra017247.1-P	Field mustard	mitochondrion	33.42	38.89
Bra029507.1-P	Field mustard	cytosol	38.69	38.89
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	34.67	38.66
Bra017228.1-P	Field mustard	cytosol	24.37	38.04
Bra013348.1-P	Field mustard	cytosol	34.67	37.1
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	36.18	36.55

Protein Annotations

EnsemblPlants:Bra001764.1	EnsemblPlants:Bra001764.1-P	EnsemblPlantsGene:Bra001764	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFAM:PF00646	PFAM:PF07734	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000254055E	UniProt:M4CC34	MapMan:35.1	:	:

Description

AT3G20030 (E=3e-123) | F-box family protein

Coordinates

chrA03:+:18319453..18320649

Molecular Weight (calculated)

45635.6 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.155

Length

398 amino acids

Sequence
(BLAST)

001: MTIISDLSWD LVEKILSRVP IISLGAVRST CKRWNRLSKN RLLCKAEARR HQFLRFMVKN YKLCSMRFDL HGILDGEEFV DPSIKEITVV DSFNQVKVTQ
101: VFHCDGLSLC VIKDKEENKT SLVVWNPYLG QTRWIQARND YNRLDLYALG YDNNRKHKIL RFLDTGSSYK VTLYEIYDIS SDSWRVLDIT QEWDIMLYHH
201: GVSLKGNTYF FAKKKILLVD GPVEIAEPHA ILLSFDFTKE RFGPPLPLPV EHYVGDTGTL SSLRDEKLAV LYQPTSMSDV QIWVTTKIEP SAVSWVPFLK
301: IDVEPFTGFG FQFHHDGASF FIDEEKKVVV VFQIDESEMT CYDTAYLIGE NGYFEKVGLG EAEKPQWSAN NVGEYCPLVC SCSFVPSLVH INNESAGS

Best Arabidopsis Sequence Match ( AT3G20030.1 )
(BLAST)

001: MTMMSDLSQD LLEEILSRVP RTSLGAVRST CKRWNTLFKD RILCKAEETR DQFRFIMKKY KLCSMRFDLN GTLNEDGGTE FVDPSIKELG HFFNQVKISK
101: VFQCDGLLLC VTKEDNIRLV VWNPYLGQIR WIESGNTNYR LFDRYAIGYD NNRKHKILRF LEYYNFNMKH RFLEYEIYDF SSNSWRVLDI APRWEIESYQ
201: RGASLKGNTY FIAKEKIEYE EDGEFPEPAD NLLCFDFTTE SFGQFLPLPF QHYLYDVGAL SSLGDEKLAA LFQCGDTDLS EVEIWVTTLT ETNTVSWNPF
301: LKVDMEPHYG RSFMFDYYGG SFFIDEEKKL AVVFQFDESG MTRYEDATYI IGENGYVKKV RLGEAPANQG GYCFPSVCFS SYVPSLVQIN QIVGFKKERE
401: EE

Arabidopsis Description

Putative F-box protein At3g20030 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.