Factsheet for Bra041044.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43733	Canola	cytosol	92.97	93.54
Bra017247.1-P	Field mustard	mitochondrion	63.3	60.53
Bra017242.1-P	Field mustard	cytosol	68.5	57.73
Bra041045.1-P	Field mustard	nucleus	62.69	54.09
Bra017228.1-P	Field mustard	cytosol	39.14	50.2
AT3G13680.1	Thale cress	cytosol	51.07	42.28
Bra021512.1-P	Field mustard	plastid	46.18	38.52
Bra001764.1-P	Field mustard	cytosol	42.81	35.18
Bra022464.1-P	Field mustard	cytosol	40.06	34.38
Bra024829.1-P	Field mustard	cytosol	42.51	34.24
Bra001803.1-P	Field mustard	cytosol	38.23	33.51
Bra001800.1-P	Field mustard	cytosol	41.28	33.42
Bra002578.1-P	Field mustard	cytosol	37.31	32.8
Bra018376.1-P	Field mustard	cytosol	22.94	32.19
Bra033383.1-P	Field mustard	cytosol	37.61	31.87
Bra017069.1-P	Field mustard	cytosol	37.0	31.43
Bra024830.1-P	Field mustard	nucleus, plastid	42.2	31.22
Bra020991.1-P	Field mustard	cytosol	38.23	31.17
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	33.95	31.09
Bra029507.1-P	Field mustard	cytosol	37.61	31.06
Bra021823.1-P	Field mustard	cytosol	32.11	28.85
Bra013348.1-P	Field mustard	cytosol	32.72	28.76
Bra021825.1-P	Field mustard	cytosol	25.69	28.19
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	33.03	27.41

Protein Annotations

EnsemblPlants:Bra041044.1	EnsemblPlants:Bra041044.1-P	EnsemblPlantsGene:Bra041044	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	SEG:seg	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253EC2A
UniProt:M4FIW5	MapMan:35.1	:	:	:	:

Description

AT1G54550 (E=1e-042) | F-box family protein

Coordinates

chrScaffold000412:-:3113..4242

Molecular Weight (calculated)

37913.1 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.191

Length

327 amino acids

Sequence
(BLAST)

001: MKTILDLPED LVEDEIISRL PMTSLRTVRS TCRKWNTECK NRILFGKEAA AKKQFMMMDS RRICLMNLDL PKDNGDPSVE QVSVLDQIQI SKVFQCDGLL
101: LCFLMDCSRL LVWNPYLGQT RWIEPRHSFQ HGDSFALGYN NNLNHKILRF SNGVHPITSF FDCFDFTTES FVPLLPLPPF HSYHGLHFTS FSCVRQDKLA
201: VLHQHWELCR TIQISLTDKI GPNEKKKKKK IGPNVVSWTK FLNVVTGFWV NPYSGSFFID EEKKIAVVFV LETVKACRYQ TAHVIGKNGY FKSVRIREAP
301: YVQNSYPHNR SYLPLLCYSY LPSLVQL

Best Arabidopsis Sequence Match ( AT1G25150.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.